Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.5■□□□□ 0.07
SHMT2P34897 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.5■□□□□ 0.07
SHMT2P34897 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
SHMT2P34897 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.5■□□□□ 0.07
SHMT2P34897 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.5■□□□□ 0.07
SHMT2P34897 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.5■□□□□ 0.07
SHMT2P34897 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.5■□□□□ 0.07
SHMT2P34897 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.5■□□□□ 0.07
SHMT2P34897 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.5■□□□□ 0.07
SHMT2P34897 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.5■□□□□ 0.07
SHMT2P34897 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC15.5■□□□□ 0.07
SHMT2P34897 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.5■□□□□ 0.07
SHMT2P34897 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.5■□□□□ 0.07
SHMT2P34897 ZNF890P-202ENST00000530367 1156 ntBASIC15.5■□□□□ 0.07
SHMT2P34897 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.5■□□□□ 0.07
SHMT2P34897 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.5■□□□□ 0.07
SHMT2P34897 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.5■□□□□ 0.07
SHMT2P34897 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 AL844908.2-201ENST00000609461 460 ntBASIC15.5■□□□□ 0.07
SHMT2P34897 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.5■□□□□ 0.07
SHMT2P34897 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC15.5■□□□□ 0.07
SHMT2P34897 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.5■□□□□ 0.07
SHMT2P34897 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.5■□□□□ 0.07
SHMT2P34897 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.5■□□□□ 0.07
SHMT2P34897 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.5■□□□□ 0.07
SHMT2P34897 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
SHMT2P34897 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
SHMT2P34897 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.5■□□□□ 0.07
SHMT2P34897 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
SHMT2P34897 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
SHMT2P34897 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
SHMT2P34897 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 AC022144.1-201ENST00000602255 1580 ntBASIC15.49■□□□□ 0.07
SHMT2P34897 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
SHMT2P34897 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
SHMT2P34897 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.49■□□□□ 0.07
SHMT2P34897 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
SHMT2P34897 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.49■□□□□ 0.07
SHMT2P34897 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
SHMT2P34897 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
SHMT2P34897 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
SHMT2P34897 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.49■□□□□ 0.07
SHMT2P34897 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.49■□□□□ 0.07
SHMT2P34897 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.49■□□□□ 0.07
SHMT2P34897 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
SHMT2P34897 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.49■□□□□ 0.07
SHMT2P34897 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.49■□□□□ 0.07
SHMT2P34897 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.49■□□□□ 0.07
SHMT2P34897 AL512361.1-201ENST00000554200 418 ntBASIC15.49■□□□□ 0.07
SHMT2P34897 AC010336.2-201ENST00000564226 506 ntBASIC15.49■□□□□ 0.07
SHMT2P34897 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.49■□□□□ 0.07
SHMT2P34897 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.49■□□□□ 0.07
SHMT2P34897 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.49■□□□□ 0.07
SHMT2P34897 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.49■□□□□ 0.07
SHMT2P34897 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.49■□□□□ 0.07
SHMT2P34897 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHMT2P34897 AC011477.6-201ENST00000604980 1927 ntBASIC15.49■□□□□ 0.07
SHMT2P34897 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHMT2P34897 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHMT2P34897 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.48■□□□□ 0.07
SHMT2P34897 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHMT2P34897 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.48■□□□□ 0.07
SHMT2P34897 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHMT2P34897 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHMT2P34897 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.48■□□□□ 0.07
SHMT2P34897 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.48■□□□□ 0.07
SHMT2P34897 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.48■□□□□ 0.07
SHMT2P34897 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.48■□□□□ 0.07
SHMT2P34897 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
SHMT2P34897 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms