Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
COL5A3P25940 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC19.37■□□□□ 0.69
COL5A3P25940 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A3P25940 AC010141.1-201ENST00000411585 623 ntBASIC19.37■□□□□ 0.69
COL5A3P25940 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC19.37■□□□□ 0.69
COL5A3P25940 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC19.37■□□□□ 0.69
COL5A3P25940 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A3P25940 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC19.37■□□□□ 0.69
COL5A3P25940 FADS2-212ENST00000522639 360 ntTSL 5 BASIC19.37■□□□□ 0.69
COL5A3P25940 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC19.37■□□□□ 0.69
COL5A3P25940 FADS2-215ENST00000574708 385 ntTSL 3 BASIC19.37■□□□□ 0.69
COL5A3P25940 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A3P25940 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A3P25940 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.37■□□□□ 0.69
COL5A3P25940 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A3P25940 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A3P25940 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A3P25940 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A3P25940 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC19.37■□□□□ 0.69
COL5A3P25940 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A3P25940 AC005332.8-201ENST00000622750 2735 ntBASIC19.37■□□□□ 0.69
COL5A3P25940 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC19.37■□□□□ 0.69
COL5A3P25940 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A3P25940 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
COL5A3P25940 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A3P25940 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A3P25940 AL008707.1-201ENST00000422498 534 ntBASIC19.37■□□□□ 0.69
COL5A3P25940 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC19.37■□□□□ 0.69
COL5A3P25940 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC19.37■□□□□ 0.69
COL5A3P25940 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC19.37■□□□□ 0.69
COL5A3P25940 AC022616.1-201ENST00000518688 554 ntBASIC19.37■□□□□ 0.69
COL5A3P25940 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC19.37■□□□□ 0.69
COL5A3P25940 AC009779.1-201ENST00000551138 283 ntBASIC19.37■□□□□ 0.69
COL5A3P25940 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC19.37■□□□□ 0.69
COL5A3P25940 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A3P25940 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A3P25940 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
COL5A3P25940 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC19.36■□□□□ 0.69
COL5A3P25940 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A3P25940 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A3P25940 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A3P25940 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A3P25940 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A3P25940 AL596087.1-201ENST00000400979 1969 ntBASIC19.36■□□□□ 0.69
COL5A3P25940 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A3P25940 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC19.36■□□□□ 0.69
COL5A3P25940 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A3P25940 KRT8P29-201ENST00000420409 1371 ntBASIC19.36■□□□□ 0.69
COL5A3P25940 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A3P25940 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.36■□□□□ 0.69
COL5A3P25940 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
COL5A3P25940 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A3P25940 AC069218.1-201ENST00000435269 762 ntBASIC19.36■□□□□ 0.69
COL5A3P25940 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC19.36■□□□□ 0.69
COL5A3P25940 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC19.36■□□□□ 0.69
COL5A3P25940 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC19.36■□□□□ 0.69
COL5A3P25940 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
COL5A3P25940 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A3P25940 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
COL5A3P25940 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.36■□□□□ 0.69
COL5A3P25940 AC009090.5-201ENST00000624886 2285 ntBASIC19.36■□□□□ 0.69
COL5A3P25940 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A3P25940 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.36■□□□□ 0.69
COL5A3P25940 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
COL5A3P25940 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
COL5A3P25940 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL5A3P25940 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A3P25940 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
COL5A3P25940 AC112504.1-201ENST00000623415 1841 ntBASIC19.35■□□□□ 0.69
COL5A3P25940 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
COL5A3P25940 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC19.35■□□□□ 0.69
COL5A3P25940 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC19.35■□□□□ 0.69
COL5A3P25940 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A3P25940 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A3P25940 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A3P25940 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A3P25940 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
COL5A3P25940 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A3P25940 NPPA-201ENST00000376476 728 ntTSL 3 BASIC19.35■□□□□ 0.69
COL5A3P25940 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC19.35■□□□□ 0.69
COL5A3P25940 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A3P25940 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC19.35■□□□□ 0.69
COL5A3P25940 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
COL5A3P25940 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC19.35■□□□□ 0.69
COL5A3P25940 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC19.35■□□□□ 0.69
COL5A3P25940 EID1-202ENST00000560490 584 ntTSL 3 BASIC19.35■□□□□ 0.69
COL5A3P25940 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC19.35■□□□□ 0.69
COL5A3P25940 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A3P25940 AL805961.1-203ENST00000641078 1258 ntBASIC19.35■□□□□ 0.69
COL5A3P25940 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
COL5A3P25940 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A3P25940 REXO1L4P-201ENST00000605109 1937 ntBASIC19.35■□□□□ 0.69
COL5A3P25940 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A3P25940 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
COL5A3P25940 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL5A3P25940 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC19.34■□□□□ 0.69
COL5A3P25940 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL5A3P25940 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms