Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.2■□□□□ 0.34
RFX1P22670 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
RFX1P22670 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX1P22670 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RFX1P22670 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC17.19■□□□□ 0.34
RFX1P22670 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.19■□□□□ 0.34
RFX1P22670 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.19■□□□□ 0.34
RFX1P22670 SSR4P1-203ENST00000599569 2260 ntBASIC17.19■□□□□ 0.34
RFX1P22670 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
RFX1P22670 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.19■□□□□ 0.34
RFX1P22670 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC17.19■□□□□ 0.34
RFX1P22670 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
RFX1P22670 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 MRPS18AP1-201ENST00000414458 589 ntBASIC17.19■□□□□ 0.34
RFX1P22670 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 AL353705.2-201ENST00000428243 662 ntBASIC17.19■□□□□ 0.34
RFX1P22670 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.19■□□□□ 0.34
RFX1P22670 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC17.19■□□□□ 0.34
RFX1P22670 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.19■□□□□ 0.34
RFX1P22670 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC17.19■□□□□ 0.34
RFX1P22670 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.19■□□□□ 0.34
RFX1P22670 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.19■□□□□ 0.34
RFX1P22670 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
RFX1P22670 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 AC105250.1-201ENST00000509378 2057 ntBASIC17.19■□□□□ 0.34
RFX1P22670 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RFX1P22670 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.19■□□□□ 0.34
RFX1P22670 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX1P22670 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX1P22670 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
RFX1P22670 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX1P22670 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX1P22670 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
RFX1P22670 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.18■□□□□ 0.34
RFX1P22670 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX1P22670 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.18■□□□□ 0.34
RFX1P22670 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX1P22670 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.18■□□□□ 0.34
RFX1P22670 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX1P22670 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC17.18■□□□□ 0.34
RFX1P22670 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC17.18■□□□□ 0.34
RFX1P22670 AC022494.1-201ENST00000466044 728 ntBASIC17.18■□□□□ 0.34
RFX1P22670 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
RFX1P22670 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.18■□□□□ 0.34
RFX1P22670 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.18■□□□□ 0.34
RFX1P22670 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC17.18■□□□□ 0.34
RFX1P22670 AC017083.2-201ENST00000608069 979 ntBASIC17.18■□□□□ 0.34
RFX1P22670 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.18■□□□□ 0.34
RFX1P22670 AC018529.1-201ENST00000613063 361 ntBASIC17.18■□□□□ 0.34
RFX1P22670 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC17.18■□□□□ 0.34
RFX1P22670 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX1P22670 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX1P22670 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX1P22670 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX1P22670 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX1P22670 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.18■□□□□ 0.34
RFX1P22670 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
RFX1P22670 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.18■□□□□ 0.34
RFX1P22670 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RFX1P22670 AC087481.3-201ENST00000602886 1894 ntBASIC17.18■□□□□ 0.34
RFX1P22670 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RFX1P22670 AC138969.3-201ENST00000546612 1459 ntBASIC17.18■□□□□ 0.34
RFX1P22670 AC138932.2-201ENST00000548268 1459 ntBASIC17.18■□□□□ 0.34
RFX1P22670 AC126755.4-201ENST00000549796 1459 ntBASIC17.18■□□□□ 0.34
RFX1P22670 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.18■□□□□ 0.34
RFX1P22670 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
RFX1P22670 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.17■□□□□ 0.34
RFX1P22670 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX1P22670 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.17■□□□□ 0.34
RFX1P22670 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.17■□□□□ 0.34
RFX1P22670 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX1P22670 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.17■□□□□ 0.34
RFX1P22670 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX1P22670 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX1P22670 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX1P22670 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RFX1P22670 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX1P22670 CICP13-201ENST00000422015 2789 ntBASIC17.17■□□□□ 0.34
RFX1P22670 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RFX1P22670 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RFX1P22670 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC17.17■□□□□ 0.34
RFX1P22670 PHKG1P2-201ENST00000457537 863 ntBASIC17.17■□□□□ 0.34
RFX1P22670 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.17■□□□□ 0.34
RFX1P22670 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.17■□□□□ 0.34
RFX1P22670 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RFX1P22670 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms