Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC15.96■□□□□ 0.15
VCANP13611 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCANP13611 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC15.96■□□□□ 0.15
VCANP13611 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCANP13611 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCANP13611 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCANP13611 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.96■□□□□ 0.15
VCANP13611 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCANP13611 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCANP13611 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VCANP13611 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC15.96■□□□□ 0.15
VCANP13611 AC006548.2-201ENST00000605217 529 ntBASIC15.96■□□□□ 0.15
VCANP13611 AL162426.1-201ENST00000624141 743 ntBASIC15.96■□□□□ 0.15
VCANP13611 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
VCANP13611 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCANP13611 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.96■□□□□ 0.15
VCANP13611 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCANP13611 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VCANP13611 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCANP13611 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.96■□□□□ 0.15
VCANP13611 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.96■□□□□ 0.15
VCANP13611 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VCANP13611 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
VCANP13611 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VCANP13611 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VCANP13611 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC15.96■□□□□ 0.15
VCANP13611 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VCANP13611 PEBP1P2-201ENST00000603980 558 ntBASIC15.96■□□□□ 0.15
VCANP13611 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.96■□□□□ 0.15
VCANP13611 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
VCANP13611 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.14
VCANP13611 RNF216P1-203ENST00000404404 2427 ntBASIC15.96■□□□□ 0.14
VCANP13611 AC004554.1-201ENST00000422830 1468 ntBASIC15.96■□□□□ 0.14
VCANP13611 AC020931.1-201ENST00000589622 1346 ntBASIC15.96■□□□□ 0.14
VCANP13611 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.95■□□□□ 0.14
VCANP13611 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
VCANP13611 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.95■□□□□ 0.14
VCANP13611 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.95■□□□□ 0.14
VCANP13611 IGKV1OR-2-201ENST00000457995 350 ntBASIC15.95■□□□□ 0.14
VCANP13611 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.95■□□□□ 0.14
VCANP13611 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.95■□□□□ 0.14
VCANP13611 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
VCANP13611 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.95■□□□□ 0.14
VCANP13611 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
VCANP13611 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
VCANP13611 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 MIR566-201ENST00000385187 94 ntBASIC15.95■□□□□ 0.14
VCANP13611 RN7SL846P-201ENST00000467429 292 ntBASIC15.95■□□□□ 0.14
VCANP13611 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.95■□□□□ 0.14
VCANP13611 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC15.95■□□□□ 0.14
VCANP13611 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.95■□□□□ 0.14
VCANP13611 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.95■□□□□ 0.14
VCANP13611 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
VCANP13611 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.95■□□□□ 0.14
VCANP13611 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC15.95■□□□□ 0.14
VCANP13611 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC15.95■□□□□ 0.14
VCANP13611 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC15.95■□□□□ 0.14
VCANP13611 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 AC138466.5-201ENST00000624002 808 ntBASIC15.95■□□□□ 0.14
VCANP13611 LINC00431-202ENST00000636375 159 ntBASIC15.95■□□□□ 0.14
VCANP13611 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC15.95■□□□□ 0.14
VCANP13611 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
VCANP13611 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
VCANP13611 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC15.94■□□□□ 0.14
VCANP13611 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.94■□□□□ 0.14
VCANP13611 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
VCANP13611 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
VCANP13611 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC15.94■□□□□ 0.14
VCANP13611 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC15.94■□□□□ 0.14
VCANP13611 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.94■□□□□ 0.14
VCANP13611 AC025262.2-201ENST00000623975 1056 ntBASIC15.94■□□□□ 0.14
VCANP13611 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
VCANP13611 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
VCANP13611 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms