Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HOXC4P09017 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HOXC4P09017 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
HOXC4P09017 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
HOXC4P09017 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
HOXC4P09017 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.27■□□□□ 0.04
HOXC4P09017 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.27■□□□□ 0.04
HOXC4P09017 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.27■□□□□ 0.04
HOXC4P09017 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
HOXC4P09017 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.27■□□□□ 0.04
HOXC4P09017 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.27■□□□□ 0.04
HOXC4P09017 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.27■□□□□ 0.04
HOXC4P09017 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
HOXC4P09017 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.27■□□□□ 0.04
HOXC4P09017 PRSS30P-206ENST00000641773 873 ntBASIC15.27■□□□□ 0.04
HOXC4P09017 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HOXC4P09017 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
HOXC4P09017 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HOXC4P09017 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
HOXC4P09017 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HOXC4P09017 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HOXC4P09017 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.27■□□□□ 0.03
HOXC4P09017 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
HOXC4P09017 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
HOXC4P09017 AP005117.1-202ENST00000581724 1908 ntBASIC15.27■□□□□ 0.03
HOXC4P09017 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
HOXC4P09017 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
HOXC4P09017 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
HOXC4P09017 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.26■□□□□ 0.03
HOXC4P09017 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 AC010491.1-201ENST00000563101 2797 ntBASIC15.26■□□□□ 0.03
HOXC4P09017 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.26■□□□□ 0.03
HOXC4P09017 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
HOXC4P09017 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.26■□□□□ 0.03
HOXC4P09017 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HOXC4P09017 AP001582.1-201ENST00000525856 295 ntBASIC15.26■□□□□ 0.03
HOXC4P09017 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.26■□□□□ 0.03
HOXC4P09017 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.26■□□□□ 0.03
HOXC4P09017 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.26■□□□□ 0.03
HOXC4P09017 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.26■□□□□ 0.03
HOXC4P09017 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.26■□□□□ 0.03
HOXC4P09017 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.26■□□□□ 0.03
HOXC4P09017 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.26■□□□□ 0.03
HOXC4P09017 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HOXC4P09017 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HOXC4P09017 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.26■□□□□ 0.03
HOXC4P09017 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HOXC4P09017 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC15.25■□□□□ 0.03
HOXC4P09017 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HOXC4P09017 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.25■□□□□ 0.03
HOXC4P09017 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HOXC4P09017 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.25■□□□□ 0.03
HOXC4P09017 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.25■□□□□ 0.03
HOXC4P09017 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HOXC4P09017 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC15.25■□□□□ 0.03
HOXC4P09017 GZMB-202ENST00000382540 816 ntTSL 5 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms