Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HLA-DOAP06340 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 TEX30-203ENST00000376022 828 ntTSL 2 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 HLA-V-201ENST00000429037 534 ntBASIC18.5■□□□□ 0.55
HLA-DOAP06340 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 AC012441.1-201ENST00000446669 685 ntBASIC18.5■□□□□ 0.55
HLA-DOAP06340 CTBP2P5-201ENST00000454986 1264 ntBASIC18.5■□□□□ 0.55
HLA-DOAP06340 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
HLA-DOAP06340 USE1-206ENST00000595101 1776 ntTSL 2 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HLA-DOAP06340 AC006449.5-201ENST00000610658 2098 ntBASIC18.5■□□□□ 0.55
HLA-DOAP06340 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 AC134312.5-201ENST00000568031 1313 ntBASIC18.49■□□□□ 0.55
HLA-DOAP06340 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 FRMD6-AS1-201ENST00000617151 2229 ntBASIC18.49■□□□□ 0.55
HLA-DOAP06340 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 ANKRD19P-201ENST00000338192 862 ntBASIC18.49■□□□□ 0.55
HLA-DOAP06340 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 BRF1-202ENST00000379932 884 ntTSL 5 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 AC093433.1-201ENST00000458048 571 ntBASIC18.49■□□□□ 0.55
HLA-DOAP06340 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 ATF5-205ENST00000600336 682 ntTSL 2 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HLA-DOAP06340 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 TP73-213ENST00000604479 1623 ntTSL 5 BASIC18.49■□□□□ 0.55
HLA-DOAP06340 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DOAP06340 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 PCDH8P1-201ENST00000428983 2773 ntBASIC18.48■□□□□ 0.55
HLA-DOAP06340 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HLA-DOAP06340 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC18.48■□□□□ 0.55
HLA-DOAP06340 NFIC-211ENST00000641145 8399 ntBASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms