Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC13.31□□□□□ -0.28
CD74P04233 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC13.31□□□□□ -0.28
CD74P04233 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC13.31□□□□□ -0.28
CD74P04233 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC13.31□□□□□ -0.28
CD74P04233 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
CD74P04233 AL009183.1-201ENST00000603760 355 ntBASIC13.31□□□□□ -0.28
CD74P04233 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC13.31□□□□□ -0.28
CD74P04233 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC13.31□□□□□ -0.28
CD74P04233 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CD74P04233 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CD74P04233 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
CD74P04233 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CD74P04233 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC13.31□□□□□ -0.28
CD74P04233 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC13.31□□□□□ -0.28
CD74P04233 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CD74P04233 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CD74P04233 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.31□□□□□ -0.28
CD74P04233 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.31□□□□□ -0.28
CD74P04233 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CD74P04233 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CD74P04233 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CD74P04233 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CD74P04233 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CD74P04233 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC13.31□□□□□ -0.28
CD74P04233 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CD74P04233 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
CD74P04233 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.31□□□□□ -0.28
CD74P04233 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.3□□□□□ -0.28
CD74P04233 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.3□□□□□ -0.28
CD74P04233 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
CD74P04233 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC13.3□□□□□ -0.28
CD74P04233 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.3□□□□□ -0.28
CD74P04233 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.3□□□□□ -0.28
CD74P04233 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.3□□□□□ -0.28
CD74P04233 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC13.3□□□□□ -0.28
CD74P04233 MED22-202ENST00000371999 987 ntTSL 3 BASIC13.3□□□□□ -0.28
CD74P04233 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC13.3□□□□□ -0.28
CD74P04233 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.3□□□□□ -0.28
CD74P04233 AC092474.2-201ENST00000424288 719 ntBASIC13.3□□□□□ -0.28
CD74P04233 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 RNF146-204ENST00000476956 884 ntTSL 2 BASIC13.3□□□□□ -0.28
CD74P04233 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC13.3□□□□□ -0.28
CD74P04233 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC13.3□□□□□ -0.28
CD74P04233 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 MIR1199-201ENST00000621445 119 ntBASIC13.3□□□□□ -0.28
CD74P04233 AC004790.2-201ENST00000623588 572 ntBASIC13.3□□□□□ -0.28
CD74P04233 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 ACE3P-201ENST00000423435 1973 ntBASIC13.3□□□□□ -0.28
CD74P04233 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CD74P04233 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.3□□□□□ -0.28
CD74P04233 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 PCDHA3-202ENST00000532566 4594 ntBASIC13.3□□□□□ -0.28
CD74P04233 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.3□□□□□ -0.28
CD74P04233 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.3□□□□□ -0.28
CD74P04233 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CD74P04233 AC136759.1-202ENST00000530858 2194 ntBASIC13.3□□□□□ -0.28
CD74P04233 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD74P04233 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.29□□□□□ -0.28
CD74P04233 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC13.29□□□□□ -0.28
CD74P04233 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD74P04233 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.29□□□□□ -0.28
CD74P04233 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD74P04233 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD74P04233 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC13.29□□□□□ -0.28
CD74P04233 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CD74P04233 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
CD74P04233 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD74P04233 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.29□□□□□ -0.28
CD74P04233 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CD74P04233 PCDHGB8P-201ENST00000502926 1973 ntBASIC13.29□□□□□ -0.28
CD74P04233 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC13.29□□□□□ -0.28
CD74P04233 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC13.29□□□□□ -0.28
CD74P04233 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.29□□□□□ -0.28
CD74P04233 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
CD74P04233 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CD74P04233 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD74P04233 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
CD74P04233 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
CD74P04233 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms