Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SDCBPO00560 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SDCBPO00560 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SDCBPO00560 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
SDCBPO00560 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SDCBPO00560 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
SDCBPO00560 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SDCBPO00560 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.52□□□□□ -0.25
SDCBPO00560 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
SDCBPO00560 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SDCBPO00560 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SDCBPO00560 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SDCBPO00560 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.52□□□□□ -0.25
SDCBPO00560 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SDCBPO00560 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SDCBPO00560 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
SDCBPO00560 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
SDCBPO00560 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
SDCBPO00560 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.51□□□□□ -0.25
SDCBPO00560 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC13.51□□□□□ -0.25
SDCBPO00560 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC13.51□□□□□ -0.25
SDCBPO00560 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC13.51□□□□□ -0.25
SDCBPO00560 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.51□□□□□ -0.25
SDCBPO00560 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
SDCBPO00560 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 AC026396.1-201ENST00000419388 421 ntBASIC13.51□□□□□ -0.25
SDCBPO00560 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC13.51□□□□□ -0.25
SDCBPO00560 AC074386.1-202ENST00000463561 864 ntBASIC13.51□□□□□ -0.25
SDCBPO00560 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC13.51□□□□□ -0.25
SDCBPO00560 SLC25A1P1-201ENST00000528351 927 ntBASIC13.51□□□□□ -0.25
SDCBPO00560 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC13.51□□□□□ -0.25
SDCBPO00560 PDPK2P-202ENST00000562415 1191 ntBASIC13.51□□□□□ -0.25
SDCBPO00560 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC13.51□□□□□ -0.25
SDCBPO00560 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC13.51□□□□□ -0.25
SDCBPO00560 AC027601.4-201ENST00000611259 610 ntBASIC13.51□□□□□ -0.25
SDCBPO00560 AL161645.1-201ENST00000622716 1255 ntBASIC13.51□□□□□ -0.25
SDCBPO00560 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.51□□□□□ -0.25
SDCBPO00560 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
SDCBPO00560 C18orf15-201ENST00000623680 2534 ntBASIC13.51□□□□□ -0.25
SDCBPO00560 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
SDCBPO00560 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
SDCBPO00560 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SDCBPO00560 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
SDCBPO00560 AC112693.3-201ENST00000624819 1983 ntBASIC13.51□□□□□ -0.25
SDCBPO00560 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.51□□□□□ -0.25
SDCBPO00560 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC13.5□□□□□ -0.25
SDCBPO00560 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
SDCBPO00560 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC13.5□□□□□ -0.25
SDCBPO00560 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC13.5□□□□□ -0.25
SDCBPO00560 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC13.5□□□□□ -0.25
SDCBPO00560 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
SDCBPO00560 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
SDCBPO00560 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.5□□□□□ -0.25
SDCBPO00560 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC13.5□□□□□ -0.25
SDCBPO00560 KRT18P3-201ENST00000451602 1288 ntBASIC13.5□□□□□ -0.25
SDCBPO00560 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SDCBPO00560 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC13.5□□□□□ -0.25
SDCBPO00560 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC13.5□□□□□ -0.25
SDCBPO00560 AC106730.1-201ENST00000566722 1090 ntBASIC13.5□□□□□ -0.25
SDCBPO00560 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC13.5□□□□□ -0.25
SDCBPO00560 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC13.5□□□□□ -0.25
SDCBPO00560 AC140113.2-201ENST00000604370 208 ntBASIC13.5□□□□□ -0.25
SDCBPO00560 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 196.7 ms