Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 AC006001.1-201ENST00000325130 474 ntBASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 MIR326-201ENST00000362220 95 ntBASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 PGGT1BP2-201ENST00000398621 1028 ntBASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 OLR1-203ENST00000432556 950 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 Z93015.1-201ENST00000451718 390 ntBASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 RHOQP1-201ENST00000555758 579 ntBASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 AC244452.3-201ENST00000636814 210 ntBASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 AL162727.3-201ENST00000635661 2787 ntBASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 AL118508.1-201ENST00000613502 2345 ntBASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 SLC25A24P2-201ENST00000415059 510 ntBASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 AC060834.1-201ENST00000443027 2032 ntBASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 COG4-212ENST00000564653 590 ntTSL 5 BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 AL450472.2-201ENST00000603663 1156 ntBASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 REXO1L8P-201ENST00000604378 1897 ntBASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCDHGA1Q9Y5H4 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
PCDHGA1Q9Y5H4 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms