Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 AL513210.1-201ENST00000629608 234 ntBASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
HIF3AQ9Y2N7 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 AL161772.1-201ENST00000610494 4412 ntBASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 AC009090.5-201ENST00000624886 2285 ntBASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 AC127383.1-201ENST00000444697 1800 ntBASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 STOM-202ENST00000347359 870 ntTSL 2 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 ELP6-209ENST00000446787 894 ntTSL 3 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 HNRNPUP1-201ENST00000554987 333 ntBASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 HOTTIP_1.1-201ENST00000620415 57 ntBASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HIF3AQ9Y2N7 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 AC138035.3-201ENST00000622706 2791 ntBASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
HIF3AQ9Y2N7 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms