Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 DUX4L27-201ENST00000554796 1261 ntBASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 AC010336.2-201ENST00000564226 506 ntBASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 AC025048.3-201ENST00000590609 569 ntBASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 AC005702.4-201ENST00000618393 416 ntBASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.4■□□□□ 0.22
AP4E1Q9UPM8 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
AP4E1Q9UPM8 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
AP4E1Q9UPM8 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.39■□□□□ 0.22
AP4E1Q9UPM8 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 AL645939.2-201ENST00000427340 991 ntBASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 IGHV3-42-201ENST00000520410 361 ntBASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 TMBIM7P-203ENST00000641617 1718 ntBASIC16.39■□□□□ 0.21
AP4E1Q9UPM8 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 AC100757.3-201ENST00000622361 1406 ntBASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 AC074338.1-201ENST00000416825 156 ntBASIC16.38■□□□□ 0.21
AP4E1Q9UPM8 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms