Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC092978.1-202ENST00000637590 1327 ntBASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
SHROOM4Q9ULL8 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC29.7■■■□□ 2.34
SHROOM4Q9ULL8 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
SHROOM4Q9ULL8 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
SHROOM4Q9ULL8 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC29.7■■■□□ 2.34
SHROOM4Q9ULL8 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
SHROOM4Q9ULL8 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC29.7■■■□□ 2.34
SHROOM4Q9ULL8 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC29.7■■■□□ 2.34
SHROOM4Q9ULL8 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC29.7■■■□□ 2.34
SHROOM4Q9ULL8 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
SHROOM4Q9ULL8 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC29.7■■■□□ 2.34
SHROOM4Q9ULL8 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 HNRNPA1P32-201ENST00000396326 963 ntBASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SHROOM4Q9ULL8 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 AL596087.1-201ENST00000400979 1969 ntBASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC29.68■■■□□ 2.34
SHROOM4Q9ULL8 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 AC018735.1-201ENST00000437208 1502 ntBASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 AL121723.1-201ENST00000445194 1519 ntBASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 MPV17-204ENST00000399052 749 ntTSL 4 BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 AC138951.2-201ENST00000623455 1161 ntBASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
SHROOM4Q9ULL8 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC29.66■■■□□ 2.34
SHROOM4Q9ULL8 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC29.66■■■□□ 2.34
SHROOM4Q9ULL8 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
SHROOM4Q9ULL8 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC29.66■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms