Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 U91328.1-201ENST00000437528 223 ntBASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 BRI3BPP1-201ENST00000594224 787 ntBASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CLCF1Q9UBD9 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.16
CLCF1Q9UBD9 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 GK-202ENST00000378941 458 ntTSL 3 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 KRT18P43-201ENST00000469825 1281 ntBASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CLCF1Q9UBD9 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms