Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 LINC00528-201ENST00000600723 2160 ntBASIC16.9■□□□□ 0.3
SIX2Q9NPC8 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 SLED1-202ENST00000512051 380 ntBASIC16.9■□□□□ 0.3
SIX2Q9NPC8 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 LINC01115-203ENST00000606068 577 ntBASIC16.9■□□□□ 0.3
SIX2Q9NPC8 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 TUBB3P1-201ENST00000405796 1332 ntBASIC16.9■□□□□ 0.3
SIX2Q9NPC8 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.89■□□□□ 0.3
SIX2Q9NPC8 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.89■□□□□ 0.3
SIX2Q9NPC8 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
SIX2Q9NPC8 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SIX2Q9NPC8 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SIX2Q9NPC8 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.89■□□□□ 0.29
SIX2Q9NPC8 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 AC015911.4-201ENST00000588022 1070 ntBASIC16.89■□□□□ 0.29
SIX2Q9NPC8 AP001160.2-201ENST00000596071 487 ntBASIC16.89■□□□□ 0.29
SIX2Q9NPC8 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.89■□□□□ 0.29
SIX2Q9NPC8 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 CICP24-201ENST00000605464 2705 ntBASIC16.89■□□□□ 0.29
SIX2Q9NPC8 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
SIX2Q9NPC8 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.88■□□□□ 0.29
SIX2Q9NPC8 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms