Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.07□□□□□ -0.16
MMP28Q9H239 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.07□□□□□ -0.16
MMP28Q9H239 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MMP28Q9H239 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.07□□□□□ -0.16
MMP28Q9H239 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
MMP28Q9H239 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 C18orf15-201ENST00000623680 2534 ntBASIC14.06□□□□□ -0.16
MMP28Q9H239 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC14.06□□□□□ -0.16
MMP28Q9H239 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.06□□□□□ -0.16
MMP28Q9H239 AC090616.6-203ENST00000579186 1945 ntBASIC14.06□□□□□ -0.16
MMP28Q9H239 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
MMP28Q9H239 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
MMP28Q9H239 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.06□□□□□ -0.16
MMP28Q9H239 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC14.06□□□□□ -0.16
MMP28Q9H239 LINC00982-205ENST00000420957 435 ntBASIC14.06□□□□□ -0.16
MMP28Q9H239 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
MMP28Q9H239 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC14.06□□□□□ -0.16
MMP28Q9H239 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC14.06□□□□□ -0.16
MMP28Q9H239 AC023511.2-201ENST00000618803 211 ntBASIC14.06□□□□□ -0.16
MMP28Q9H239 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
MMP28Q9H239 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.06□□□□□ -0.16
MMP28Q9H239 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC14.06□□□□□ -0.16
MMP28Q9H239 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
MMP28Q9H239 AL359183.1-201ENST00000623796 2132 ntBASIC14.06□□□□□ -0.16
MMP28Q9H239 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.06□□□□□ -0.16
MMP28Q9H239 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MMP28Q9H239 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
MMP28Q9H239 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC14.05□□□□□ -0.16
MMP28Q9H239 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC14.05□□□□□ -0.16
MMP28Q9H239 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 LINC01144-201ENST00000626198 1710 ntBASIC14.05□□□□□ -0.16
MMP28Q9H239 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
MMP28Q9H239 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
MMP28Q9H239 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC14.05□□□□□ -0.16
MMP28Q9H239 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC14.05□□□□□ -0.16
MMP28Q9H239 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
MMP28Q9H239 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC14.05□□□□□ -0.16
MMP28Q9H239 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC14.05□□□□□ -0.16
MMP28Q9H239 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
MMP28Q9H239 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC14.05□□□□□ -0.16
MMP28Q9H239 MTDHP4-201ENST00000600287 670 ntBASIC14.05□□□□□ -0.16
MMP28Q9H239 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
MMP28Q9H239 AL589182.2-201ENST00000619332 1049 ntBASIC14.05□□□□□ -0.16
MMP28Q9H239 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC14.05□□□□□ -0.16
MMP28Q9H239 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.05□□□□□ -0.16
MMP28Q9H239 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.05□□□□□ -0.16
MMP28Q9H239 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.05□□□□□ -0.16
MMP28Q9H239 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
MMP28Q9H239 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms