Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 FUZ-207ENST00000526575 482 ntTSL 4 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAIPQ9BWF2 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 HAUS4P1-201ENST00000406739 1145 ntBASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 GPR53P-205ENST00000457298 1084 ntBASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 RN7SL399P-201ENST00000471648 279 ntBASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 AC092552.1-201ENST00000547243 906 ntBASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 MIR8072-201ENST00000614241 80 ntBASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAIPQ9BWF2 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 AC079776.1-201ENST00000401540 1152 ntBASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 AC136604.1-201ENST00000418535 575 ntBASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 APOC4-201ENST00000591600 348 ntTSL 3 BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 WFDC1-204ENST00000613603 549 ntBASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 MIR6752-201ENST00000618442 71 ntBASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 AL158212.4-201ENST00000624062 1286 ntBASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAIPQ9BWF2 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms