Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
NKX3-1Q99801 CRYGEP-201ENST00000412192 528 ntBASIC13.88□□□□□ -0.19
NKX3-1Q99801 MED15P5-201ENST00000423150 992 ntBASIC13.88□□□□□ -0.19
NKX3-1Q99801 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
NKX3-1Q99801 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 AC112693.3-201ENST00000624819 1983 ntBASIC13.88□□□□□ -0.19
NKX3-1Q99801 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
NKX3-1Q99801 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 AL589702.1-201ENST00000641229 1509 ntBASIC13.88□□□□□ -0.19
NKX3-1Q99801 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
NKX3-1Q99801 AC117489.1-201ENST00000625169 3217 ntBASIC13.88□□□□□ -0.19
NKX3-1Q99801 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
NKX3-1Q99801 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
NKX3-1Q99801 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC13.88□□□□□ -0.19
NKX3-1Q99801 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
NKX3-1Q99801 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 KRT18P34-201ENST00000488218 1270 ntBASIC13.87□□□□□ -0.19
NKX3-1Q99801 CFL1-202ENST00000524553 860 ntTSL 2 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 AC092865.5-201ENST00000545435 363 ntBASIC13.87□□□□□ -0.19
NKX3-1Q99801 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 MIR3909-201ENST00000579518 119 ntBASIC13.87□□□□□ -0.19
NKX3-1Q99801 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 Z83851.2-201ENST00000609564 659 ntBASIC13.87□□□□□ -0.19
NKX3-1Q99801 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 NARF-206ENST00000457415 1668 ntTSL 5 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC13.87□□□□□ -0.19
NKX3-1Q99801 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
NKX3-1Q99801 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 FALEC-201ENST00000416894 566 ntTSL 3 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 AC007967.2-201ENST00000432613 625 ntBASIC13.86□□□□□ -0.19
NKX3-1Q99801 IGHV3-22-201ENST00000520721 359 ntBASIC13.86□□□□□ -0.19
NKX3-1Q99801 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
NKX3-1Q99801 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 TCAP-202ENST00000578283 583 ntTSL 5 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC13.86□□□□□ -0.19
NKX3-1Q99801 AC023511.2-201ENST00000618803 211 ntBASIC13.86□□□□□ -0.19
NKX3-1Q99801 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms