Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CDCA3Q99618 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.21■□□□□ 0.19
CDCA3Q99618 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CDCA3Q99618 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
CDCA3Q99618 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.21■□□□□ 0.19
CDCA3Q99618 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
CDCA3Q99618 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC16.21■□□□□ 0.19
CDCA3Q99618 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC16.21■□□□□ 0.19
CDCA3Q99618 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 NKAIN1P1-201ENST00000435754 582 ntBASIC16.21■□□□□ 0.19
CDCA3Q99618 IMP3P2-201ENST00000489760 475 ntBASIC16.21■□□□□ 0.19
CDCA3Q99618 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 AC004066.1-201ENST00000502488 802 ntBASIC16.21■□□□□ 0.19
CDCA3Q99618 AC044849.1-201ENST00000519737 1188 ntBASIC16.21■□□□□ 0.19
CDCA3Q99618 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC16.21■□□□□ 0.19
CDCA3Q99618 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
CDCA3Q99618 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC16.21■□□□□ 0.19
CDCA3Q99618 MIR4313-201ENST00000580760 101 ntBASIC16.21■□□□□ 0.19
CDCA3Q99618 RN7SL713P-201ENST00000582127 302 ntBASIC16.21■□□□□ 0.19
CDCA3Q99618 PPY2P-201ENST00000582808 702 ntBASIC16.21■□□□□ 0.19
CDCA3Q99618 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC16.21■□□□□ 0.19
CDCA3Q99618 AC097724.1-201ENST00000609581 426 ntBASIC16.21■□□□□ 0.19
CDCA3Q99618 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC16.21■□□□□ 0.19
CDCA3Q99618 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.21■□□□□ 0.19
CDCA3Q99618 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.21■□□□□ 0.19
CDCA3Q99618 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
CDCA3Q99618 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.21■□□□□ 0.19
CDCA3Q99618 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.21■□□□□ 0.19
CDCA3Q99618 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CDCA3Q99618 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CDCA3Q99618 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CDCA3Q99618 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CDCA3Q99618 AC005052.1-201ENST00000625181 2492 ntBASIC16.21■□□□□ 0.18
CDCA3Q99618 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.21■□□□□ 0.18
CDCA3Q99618 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CDCA3Q99618 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
CDCA3Q99618 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.18
CDCA3Q99618 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDCA3Q99618 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CDCA3Q99618 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.2■□□□□ 0.18
CDCA3Q99618 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDCA3Q99618 KRT8P14-201ENST00000414254 1442 ntBASIC16.2■□□□□ 0.18
CDCA3Q99618 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.2■□□□□ 0.18
CDCA3Q99618 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDCA3Q99618 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.2■□□□□ 0.18
CDCA3Q99618 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDCA3Q99618 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.2■□□□□ 0.18
CDCA3Q99618 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDCA3Q99618 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDCA3Q99618 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDCA3Q99618 SMS-201ENST00000379404 1174 ntTSL 3 BASIC16.2■□□□□ 0.18
CDCA3Q99618 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC16.2■□□□□ 0.18
CDCA3Q99618 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDCA3Q99618 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDCA3Q99618 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.2■□□□□ 0.18
CDCA3Q99618 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC16.2■□□□□ 0.18
CDCA3Q99618 RNF41-210ENST00000552244 716 ntTSL 3 BASIC16.2■□□□□ 0.18
CDCA3Q99618 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.2■□□□□ 0.18
CDCA3Q99618 NAT9-224ENST00000583757 583 ntTSL 3 BASIC16.2■□□□□ 0.18
CDCA3Q99618 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDCA3Q99618 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC16.2■□□□□ 0.18
CDCA3Q99618 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC16.2■□□□□ 0.18
CDCA3Q99618 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CDCA3Q99618 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDCA3Q99618 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
CDCA3Q99618 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CDCA3Q99618 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CDCA3Q99618 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
CDCA3Q99618 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CDCA3Q99618 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.2■□□□□ 0.18
CDCA3Q99618 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CDCA3Q99618 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC16.19■□□□□ 0.18
CDCA3Q99618 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDCA3Q99618 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.19■□□□□ 0.18
CDCA3Q99618 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDCA3Q99618 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.19■□□□□ 0.18
CDCA3Q99618 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDCA3Q99618 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CDCA3Q99618 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDCA3Q99618 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDCA3Q99618 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CDCA3Q99618 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CDCA3Q99618 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms