Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 CENPM-206ENST00000407253 818 ntTSL 2 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 GSAP-205ENST00000430584 600 ntTSL 5 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 AC009407.1-201ENST00000568958 598 ntBASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 AC022144.1-201ENST00000602255 1580 ntBASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.89■□□□□ 0.61
CHMP4CQ96CF2 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 RPS19-201ENST00000221975 500 ntTSL 3 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 AL080243.2-201ENST00000418783 582 ntBASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 HLA-V-204ENST00000476601 1289 ntBASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 AL035456.1-201ENST00000456064 1369 ntBASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.88■□□□□ 0.61
CHMP4CQ96CF2 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 GOLGA6L11P-201ENST00000417252 1298 ntBASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 GNAQP1-201ENST00000444815 1067 ntBASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 POLD4-211ENST00000539074 714 ntTSL 3 BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 AL512361.1-201ENST00000554200 418 ntBASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 AL844908.2-201ENST00000609461 460 ntBASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 AC008761.3-201ENST00000624803 892 ntBASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CHMP4CQ96CF2 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms