Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18■□□□□ 0.47
ERCC4Q92889 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18■□□□□ 0.47
ERCC4Q92889 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
ERCC4Q92889 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
ERCC4Q92889 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
ERCC4Q92889 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
ERCC4Q92889 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
ERCC4Q92889 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
ERCC4Q92889 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18■□□□□ 0.47
ERCC4Q92889 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18■□□□□ 0.47
ERCC4Q92889 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18■□□□□ 0.47
ERCC4Q92889 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18■□□□□ 0.47
ERCC4Q92889 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18■□□□□ 0.47
ERCC4Q92889 MIR4313-201ENST00000580760 101 ntBASIC18■□□□□ 0.47
ERCC4Q92889 AC061975.2-201ENST00000581722 295 ntBASIC18■□□□□ 0.47
ERCC4Q92889 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18■□□□□ 0.47
ERCC4Q92889 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18■□□□□ 0.47
ERCC4Q92889 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
ERCC4Q92889 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ERCC4Q92889 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
ERCC4Q92889 AL136982.4-201ENST00000437689 1740 ntBASIC18■□□□□ 0.47
ERCC4Q92889 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC18■□□□□ 0.47
ERCC4Q92889 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ERCC4Q92889 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC18■□□□□ 0.47
ERCC4Q92889 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ERCC4Q92889 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
ERCC4Q92889 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18■□□□□ 0.47
ERCC4Q92889 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18■□□□□ 0.47
ERCC4Q92889 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
ERCC4Q92889 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
ERCC4Q92889 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC17.99■□□□□ 0.47
ERCC4Q92889 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.99■□□□□ 0.47
ERCC4Q92889 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ERCC4Q92889 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ERCC4Q92889 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
ERCC4Q92889 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ERCC4Q92889 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC17.99■□□□□ 0.47
ERCC4Q92889 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ERCC4Q92889 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
ERCC4Q92889 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.99■□□□□ 0.47
ERCC4Q92889 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ERCC4Q92889 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.99■□□□□ 0.47
ERCC4Q92889 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ERCC4Q92889 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.99■□□□□ 0.47
ERCC4Q92889 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ERCC4Q92889 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
ERCC4Q92889 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
ERCC4Q92889 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.99■□□□□ 0.47
ERCC4Q92889 AL161645.1-201ENST00000622716 1255 ntBASIC17.99■□□□□ 0.47
ERCC4Q92889 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
ERCC4Q92889 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
ERCC4Q92889 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
ERCC4Q92889 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.99■□□□□ 0.47
ERCC4Q92889 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ERCC4Q92889 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ERCC4Q92889 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC17.99■□□□□ 0.47
ERCC4Q92889 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ERCC4Q92889 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC17.99■□□□□ 0.47
ERCC4Q92889 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ERCC4Q92889 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.99■□□□□ 0.47
ERCC4Q92889 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ERCC4Q92889 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC17.98■□□□□ 0.47
ERCC4Q92889 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC17.98■□□□□ 0.47
ERCC4Q92889 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.98■□□□□ 0.47
ERCC4Q92889 AL691432.1-201ENST00000596308 1422 ntBASIC17.98■□□□□ 0.47
ERCC4Q92889 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.98■□□□□ 0.47
ERCC4Q92889 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
ERCC4Q92889 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
ERCC4Q92889 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.98■□□□□ 0.47
ERCC4Q92889 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.98■□□□□ 0.47
ERCC4Q92889 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.98■□□□□ 0.47
ERCC4Q92889 AL590627.1-203ENST00000421194 1026 ntBASIC17.98■□□□□ 0.47
ERCC4Q92889 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.98■□□□□ 0.47
ERCC4Q92889 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.98■□□□□ 0.47
ERCC4Q92889 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.98■□□□□ 0.47
ERCC4Q92889 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.98■□□□□ 0.47
ERCC4Q92889 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.98■□□□□ 0.47
ERCC4Q92889 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.98■□□□□ 0.47
ERCC4Q92889 AC140113.2-201ENST00000604370 208 ntBASIC17.98■□□□□ 0.47
ERCC4Q92889 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.98■□□□□ 0.47
ERCC4Q92889 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.98■□□□□ 0.47
ERCC4Q92889 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
ERCC4Q92889 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ERCC4Q92889 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms