Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 AP001889.1-201ENST00000525414 633 ntBASIC15.34■□□□□ 0.05
LMX1AQ8TE12 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 AC000095.1-201ENST00000603208 874 ntBASIC15.34■□□□□ 0.05
LMX1AQ8TE12 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 METTL26-214ENST00000614890 801 ntTSL 3 BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 AL033527.4-201ENST00000641026 673 ntBASIC15.34■□□□□ 0.05
LMX1AQ8TE12 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LMX1AQ8TE12 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.33■□□□□ 0.05
LMX1AQ8TE12 PCDHA12-202ENST00000613593 2588 ntBASIC15.33■□□□□ 0.05
LMX1AQ8TE12 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.33■□□□□ 0.05
LMX1AQ8TE12 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
LMX1AQ8TE12 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
LMX1AQ8TE12 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
LMX1AQ8TE12 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC15.33■□□□□ 0.05
LMX1AQ8TE12 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.33■□□□□ 0.05
LMX1AQ8TE12 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
LMX1AQ8TE12 AC011477.6-201ENST00000604980 1927 ntBASIC15.33■□□□□ 0.05
LMX1AQ8TE12 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
LMX1AQ8TE12 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
LMX1AQ8TE12 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 STX1A-203ENST00000395155 783 ntTSL 2 BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 AC092658.1-201ENST00000505836 891 ntBASIC15.33■□□□□ 0.04
LMX1AQ8TE12 MFF-223ENST00000524634 647 ntTSL 2 BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 CLUHP6-201ENST00000580789 941 ntBASIC15.33■□□□□ 0.04
LMX1AQ8TE12 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.33■□□□□ 0.04
LMX1AQ8TE12 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 AL596087.1-201ENST00000400979 1969 ntBASIC15.33■□□□□ 0.04
LMX1AQ8TE12 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
LMX1AQ8TE12 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 AC005229.1-201ENST00000392885 409 ntBASIC15.32■□□□□ 0.04
LMX1AQ8TE12 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LMX1AQ8TE12 BAATP1-201ENST00000412284 1225 ntBASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms