Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
KRT39Q6A163 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
KRT39Q6A163 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC17.06■□□□□ 0.32
KRT39Q6A163 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.05■□□□□ 0.32
KRT39Q6A163 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.05■□□□□ 0.32
KRT39Q6A163 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
KRT39Q6A163 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
KRT39Q6A163 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
KRT39Q6A163 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
KRT39Q6A163 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.05■□□□□ 0.32
KRT39Q6A163 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.05■□□□□ 0.32
KRT39Q6A163 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.05■□□□□ 0.32
KRT39Q6A163 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC17.05■□□□□ 0.32
KRT39Q6A163 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.05■□□□□ 0.32
KRT39Q6A163 SDHAP3-202ENST00000515467 728 ntBASIC17.05■□□□□ 0.32
KRT39Q6A163 ZNF890P-202ENST00000530367 1156 ntBASIC17.05■□□□□ 0.32
KRT39Q6A163 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC17.05■□□□□ 0.32
KRT39Q6A163 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 CMC2-214ENST00000565925 640 ntTSL 5 BASIC17.05■□□□□ 0.32
KRT39Q6A163 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC17.05■□□□□ 0.32
KRT39Q6A163 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.05■□□□□ 0.32
KRT39Q6A163 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.05■□□□□ 0.32
KRT39Q6A163 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.05■□□□□ 0.32
KRT39Q6A163 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.05■□□□□ 0.32
KRT39Q6A163 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.05■□□□□ 0.32
KRT39Q6A163 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
KRT39Q6A163 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
KRT39Q6A163 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17.05■□□□□ 0.32
KRT39Q6A163 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.05■□□□□ 0.32
KRT39Q6A163 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.05■□□□□ 0.32
KRT39Q6A163 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC17.05■□□□□ 0.32
KRT39Q6A163 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
KRT39Q6A163 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
KRT39Q6A163 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
KRT39Q6A163 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.04■□□□□ 0.32
KRT39Q6A163 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.04■□□□□ 0.32
KRT39Q6A163 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.04■□□□□ 0.32
KRT39Q6A163 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.04■□□□□ 0.32
KRT39Q6A163 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.04■□□□□ 0.32
KRT39Q6A163 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC17.04■□□□□ 0.32
KRT39Q6A163 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.04■□□□□ 0.32
KRT39Q6A163 TSSK5P-201ENST00000423978 907 ntBASIC17.04■□□□□ 0.32
KRT39Q6A163 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.04■□□□□ 0.32
KRT39Q6A163 USP40-206ENST00000443711 628 ntTSL 2 BASIC17.04■□□□□ 0.32
KRT39Q6A163 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.04■□□□□ 0.32
KRT39Q6A163 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.04■□□□□ 0.32
KRT39Q6A163 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.04■□□□□ 0.32
KRT39Q6A163 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC17.04■□□□□ 0.32
KRT39Q6A163 RFPL4AP1-201ENST00000530883 850 ntBASIC17.04■□□□□ 0.32
KRT39Q6A163 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.04■□□□□ 0.32
KRT39Q6A163 AC074044.1-201ENST00000609673 707 ntBASIC17.04■□□□□ 0.32
KRT39Q6A163 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.04■□□□□ 0.32
KRT39Q6A163 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
KRT39Q6A163 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
KRT39Q6A163 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.04■□□□□ 0.32
KRT39Q6A163 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.04■□□□□ 0.32
KRT39Q6A163 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.04■□□□□ 0.32
KRT39Q6A163 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
KRT39Q6A163 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC17.04■□□□□ 0.32
KRT39Q6A163 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.04■□□□□ 0.32
KRT39Q6A163 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.04■□□□□ 0.32
KRT39Q6A163 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
KRT39Q6A163 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms