Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CHD9Q3L8U1 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHD9Q3L8U1 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.2
CHD9Q3L8U1 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHD9Q3L8U1 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CHD9Q3L8U1 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CHD9Q3L8U1 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
CHD9Q3L8U1 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHD9Q3L8U1 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CHD9Q3L8U1 AC073150.1-201ENST00000450406 1084 ntBASIC16.33■□□□□ 0.2
CHD9Q3L8U1 IGHV3-37-201ENST00000518544 340 ntBASIC16.33■□□□□ 0.2
CHD9Q3L8U1 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
CHD9Q3L8U1 RTN3P1-201ENST00000536295 711 ntBASIC16.33■□□□□ 0.2
CHD9Q3L8U1 FOS-204ENST00000554617 796 ntTSL 2 BASIC16.33■□□□□ 0.2
CHD9Q3L8U1 AC005324.6-201ENST00000587972 613 ntBASIC16.33■□□□□ 0.2
CHD9Q3L8U1 AC009084.3-201ENST00000623356 437 ntBASIC16.33■□□□□ 0.2
CHD9Q3L8U1 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHD9Q3L8U1 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.33■□□□□ 0.2
CHD9Q3L8U1 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CHD9Q3L8U1 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 AC005740.2-201ENST00000511085 419 ntBASIC16.32■□□□□ 0.2
CHD9Q3L8U1 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 AC092171.5-201ENST00000608012 942 ntBASIC16.32■□□□□ 0.2
CHD9Q3L8U1 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 AC103691.2-201ENST00000618824 433 ntBASIC16.32■□□□□ 0.2
CHD9Q3L8U1 CASP16P-204ENST00000635032 809 ntBASIC16.32■□□□□ 0.2
CHD9Q3L8U1 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 AC078991.1-201ENST00000437297 610 ntBASIC16.32■□□□□ 0.2
CHD9Q3L8U1 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 AC011477.6-201ENST00000604980 1927 ntBASIC16.32■□□□□ 0.2
CHD9Q3L8U1 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 RPL18P13-201ENST00000478088 569 ntBASIC16.32■□□□□ 0.2
CHD9Q3L8U1 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHD9Q3L8U1 AL139384.1-201ENST00000612143 3047 ntBASIC16.31■□□□□ 0.2
CHD9Q3L8U1 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 NDUFAB1P1-201ENST00000404262 460 ntBASIC16.31■□□□□ 0.2
CHD9Q3L8U1 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 AC090164.2-201ENST00000611487 516 ntBASIC16.31■□□□□ 0.2
CHD9Q3L8U1 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC16.31■□□□□ 0.2
CHD9Q3L8U1 AL358472.3-201ENST00000608147 415 ntBASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms