Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 CALR4P-201ENST00000431943 946 ntBASIC15.24■□□□□ 0.03
COL28A1Q2UY09 AC006033.1-201ENST00000440505 426 ntBASIC15.24■□□□□ 0.03
COL28A1Q2UY09 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 RIT1-205ENST00000539040 919 ntTSL 2 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 AC022188.1-201ENST00000620960 1664 ntBASIC15.24■□□□□ 0.03
COL28A1Q2UY09 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL28A1Q2UY09 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.23■□□□□ 0.03
COL28A1Q2UY09 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 AL512652.2-201ENST00000625156 1716 ntBASIC15.23■□□□□ 0.03
COL28A1Q2UY09 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL28A1Q2UY09 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL28A1Q2UY09 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms