Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 AL138709.1-201ENST00000614840 1693 ntBASIC17.83■□□□□ 0.45
CCNA1P78396 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCNA1P78396 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCNA1P78396 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCNA1P78396 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCNA1P78396 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCNA1P78396 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.45
CCNA1P78396 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCNA1P78396 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
CCNA1P78396 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
CCNA1P78396 POLL-217ENST00000628479 1953 ntTSL 5 BASIC17.83■□□□□ 0.44
CCNA1P78396 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCNA1P78396 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCNA1P78396 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.83■□□□□ 0.44
CCNA1P78396 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCNA1P78396 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.83■□□□□ 0.44
CCNA1P78396 CD8B2-202ENST00000417670 633 ntBASIC17.83■□□□□ 0.44
CCNA1P78396 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCNA1P78396 AC104306.2-201ENST00000451877 341 ntBASIC17.83■□□□□ 0.44
CCNA1P78396 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC17.83■□□□□ 0.44
CCNA1P78396 ARTN-209ENST00000479128 471 ntTSL 3 BASIC17.83■□□□□ 0.44
CCNA1P78396 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC17.83■□□□□ 0.44
CCNA1P78396 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCNA1P78396 ZNF767P-206ENST00000513792 565 ntBASIC17.83■□□□□ 0.44
CCNA1P78396 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC17.83■□□□□ 0.44
CCNA1P78396 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.83■□□□□ 0.44
CCNA1P78396 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.83■□□□□ 0.44
CCNA1P78396 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCNA1P78396 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
CCNA1P78396 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
CCNA1P78396 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.83■□□□□ 0.44
CCNA1P78396 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.83■□□□□ 0.44
CCNA1P78396 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCNA1P78396 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCNA1P78396 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
CCNA1P78396 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC17.83■□□□□ 0.44
CCNA1P78396 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.83■□□□□ 0.44
CCNA1P78396 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCNA1P78396 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
CCNA1P78396 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
CCNA1P78396 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
CCNA1P78396 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CCNA1P78396 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCNA1P78396 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC17.82■□□□□ 0.44
CCNA1P78396 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
CCNA1P78396 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC17.82■□□□□ 0.44
CCNA1P78396 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
CCNA1P78396 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCNA1P78396 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCNA1P78396 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CCNA1P78396 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.82■□□□□ 0.44
CCNA1P78396 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCNA1P78396 AC012313.1-201ENST00000593393 3059 ntBASIC17.82■□□□□ 0.44
CCNA1P78396 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCNA1P78396 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCNA1P78396 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC17.82■□□□□ 0.44
CCNA1P78396 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CCNA1P78396 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCNA1P78396 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCNA1P78396 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCNA1P78396 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
CCNA1P78396 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCNA1P78396 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCNA1P78396 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC17.82■□□□□ 0.44
CCNA1P78396 PRKN-211ENST00000615065 261 ntTSL 5 BASIC17.82■□□□□ 0.44
CCNA1P78396 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC17.82■□□□□ 0.44
CCNA1P78396 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC17.82■□□□□ 0.44
CCNA1P78396 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCNA1P78396 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CCNA1P78396 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.82■□□□□ 0.44
CCNA1P78396 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CCNA1P78396 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CCNA1P78396 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCNA1P78396 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.82■□□□□ 0.44
CCNA1P78396 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
CCNA1P78396 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
CCNA1P78396 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.82■□□□□ 0.44
CCNA1P78396 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.82■□□□□ 0.44
CCNA1P78396 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CCNA1P78396 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CCNA1P78396 FOS-202ENST00000535987 1402 ntTSL 2 BASIC17.81■□□□□ 0.44
CCNA1P78396 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17.81■□□□□ 0.44
CCNA1P78396 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCNA1P78396 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CCNA1P78396 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCNA1P78396 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.81■□□□□ 0.44
CCNA1P78396 AC092171.3-201ENST00000610122 2651 ntBASIC17.81■□□□□ 0.44
CCNA1P78396 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCNA1P78396 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCNA1P78396 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCNA1P78396 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CCNA1P78396 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCNA1P78396 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCNA1P78396 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCNA1P78396 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCNA1P78396 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CCNA1P78396 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CCNA1P78396 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
CCNA1P78396 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC17.81■□□□□ 0.44
CCNA1P78396 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms