Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.01□□□□□ -0.01
LIM2P55344 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.01□□□□□ -0.01
LIM2P55344 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 SSR4P1-203ENST00000599569 2260 ntBASIC15.01□□□□□ -0.01
LIM2P55344 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.01□□□□□ -0.01
LIM2P55344 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
LIM2P55344 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.01□□□□□ -0.01
LIM2P55344 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.01□□□□□ -0.01
LIM2P55344 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LIM2P55344 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.01□□□□□ -0.01
LIM2P55344 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15□□□□□ -0.01
LIM2P55344 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 AC136621.1-201ENST00000624017 2304 ntBASIC15□□□□□ -0.01
LIM2P55344 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
LIM2P55344 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15□□□□□ -0.01
LIM2P55344 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 BASP1P1-201ENST00000430708 665 ntBASIC15□□□□□ -0.01
LIM2P55344 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15□□□□□ -0.01
LIM2P55344 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15□□□□□ -0.01
LIM2P55344 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC15□□□□□ -0.01
LIM2P55344 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15□□□□□ -0.01
LIM2P55344 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15□□□□□ -0.01
LIM2P55344 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15□□□□□ -0.01
LIM2P55344 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15□□□□□ -0.01
LIM2P55344 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
LIM2P55344 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC15□□□□□ -0.01
LIM2P55344 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
LIM2P55344 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
LIM2P55344 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LIM2P55344 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
LIM2P55344 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15□□□□□ -0.01
LIM2P55344 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15□□□□□ -0.01
LIM2P55344 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15□□□□□ -0.01
LIM2P55344 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.99□□□□□ -0.01
LIM2P55344 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
LIM2P55344 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.99□□□□□ -0.01
LIM2P55344 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.99□□□□□ -0.01
LIM2P55344 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 AL607033.1-201ENST00000623900 1599 ntBASIC14.99□□□□□ -0.01
LIM2P55344 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.99□□□□□ -0.01
LIM2P55344 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.99□□□□□ -0.01
LIM2P55344 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.99□□□□□ -0.01
LIM2P55344 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
LIM2P55344 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.99□□□□□ -0.01
LIM2P55344 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.99□□□□□ -0.01
LIM2P55344 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.99□□□□□ -0.01
LIM2P55344 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.99□□□□□ -0.01
LIM2P55344 TARDBPP1-201ENST00000442013 1203 ntBASIC14.99□□□□□ -0.01
LIM2P55344 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.99□□□□□ -0.01
LIM2P55344 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC14.99□□□□□ -0.01
LIM2P55344 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.99□□□□□ -0.01
LIM2P55344 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.99□□□□□ -0.01
LIM2P55344 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIM2P55344 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.99□□□□□ -0.01
LIM2P55344 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.99□□□□□ -0.01
LIM2P55344 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.99□□□□□ -0.01
LIM2P55344 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
LIM2P55344 AC025048.3-201ENST00000590609 569 ntBASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms