Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL607033.1-201ENST00000623900 1599 ntBASIC15.32■□□□□ 0.04
FOXA1P55317 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.32■□□□□ 0.04
FOXA1P55317 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA1P55317 CICP23-201ENST00000605013 2741 ntBASIC15.32■□□□□ 0.04
FOXA1P55317 STRN-202ENST00000379213 2254 ntTSL 5 BASIC15.32■□□□□ 0.04
FOXA1P55317 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
FOXA1P55317 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA1P55317 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA1P55317 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.32■□□□□ 0.04
FOXA1P55317 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA1P55317 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA1P55317 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
FOXA1P55317 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA1P55317 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.32■□□□□ 0.04
FOXA1P55317 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
FOXA1P55317 AZGP1P1-201ENST00000411909 902 ntBASIC15.32■□□□□ 0.04
FOXA1P55317 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.32■□□□□ 0.04
FOXA1P55317 AL592309.1-201ENST00000443127 649 ntBASIC15.32■□□□□ 0.04
FOXA1P55317 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.32■□□□□ 0.04
FOXA1P55317 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.32■□□□□ 0.04
FOXA1P55317 RARRES2P9-201ENST00000565168 469 ntBASIC15.32■□□□□ 0.04
FOXA1P55317 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
FOXA1P55317 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.32■□□□□ 0.04
FOXA1P55317 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
FOXA1P55317 C20orf181-201ENST00000623918 480 ntBASIC15.32■□□□□ 0.04
FOXA1P55317 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA1P55317 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA1P55317 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
FOXA1P55317 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA1P55317 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.32■□□□□ 0.04
FOXA1P55317 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA1P55317 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA1P55317 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
FOXA1P55317 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.32■□□□□ 0.04
FOXA1P55317 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA1P55317 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA1P55317 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA1P55317 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
FOXA1P55317 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.31■□□□□ 0.04
FOXA1P55317 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.31■□□□□ 0.04
FOXA1P55317 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.31■□□□□ 0.04
FOXA1P55317 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.31■□□□□ 0.04
FOXA1P55317 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.31■□□□□ 0.04
FOXA1P55317 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.31■□□□□ 0.04
FOXA1P55317 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 MIR574-201ENST00000385209 96 ntBASIC15.31■□□□□ 0.04
FOXA1P55317 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
FOXA1P55317 AC004832.2-201ENST00000426397 482 ntBASIC15.31■□□□□ 0.04
FOXA1P55317 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.31■□□□□ 0.04
FOXA1P55317 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.31■□□□□ 0.04
FOXA1P55317 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.31■□□□□ 0.04
FOXA1P55317 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.31■□□□□ 0.04
FOXA1P55317 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.31■□□□□ 0.04
FOXA1P55317 AC148477.4-201ENST00000613430 1793 ntBASIC15.31■□□□□ 0.04
FOXA1P55317 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.31■□□□□ 0.04
FOXA1P55317 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
FOXA1P55317 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.3■□□□□ 0.04
FOXA1P55317 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.3■□□□□ 0.04
FOXA1P55317 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
FOXA1P55317 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
FOXA1P55317 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.3■□□□□ 0.04
FOXA1P55317 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.3■□□□□ 0.04
FOXA1P55317 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.3■□□□□ 0.04
FOXA1P55317 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
FOXA1P55317 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms