Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HOXA1P49639 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
HOXA1P49639 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXA1P49639 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC13.23□□□□□ -0.29
HOXA1P49639 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC13.23□□□□□ -0.29
HOXA1P49639 LINC02447-202ENST00000501888 2146 ntBASIC13.23□□□□□ -0.29
HOXA1P49639 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXA1P49639 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 AL121772.3-201ENST00000610840 674 ntBASIC13.23□□□□□ -0.29
HOXA1P49639 BSG-214ENST00000614867 960 ntTSL 3 BASIC13.23□□□□□ -0.29
HOXA1P49639 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
HOXA1P49639 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC13.23□□□□□ -0.29
HOXA1P49639 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
HOXA1P49639 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC13.23□□□□□ -0.29
HOXA1P49639 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
HOXA1P49639 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
HOXA1P49639 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXA1P49639 CDC14C-201ENST00000428251 1719 ntBASIC13.22□□□□□ -0.29
HOXA1P49639 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC13.22□□□□□ -0.29
HOXA1P49639 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXA1P49639 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
HOXA1P49639 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 MBLAC2-202ENST00000514906 1936 ntBASIC13.22□□□□□ -0.29
HOXA1P49639 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 MIR648-201ENST00000385046 94 ntBASIC13.22□□□□□ -0.29
HOXA1P49639 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
HOXA1P49639 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC13.22□□□□□ -0.29
HOXA1P49639 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC13.22□□□□□ -0.29
HOXA1P49639 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC13.22□□□□□ -0.29
HOXA1P49639 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.22□□□□□ -0.29
HOXA1P49639 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 AC006504.4-201ENST00000592118 1568 ntBASIC13.22□□□□□ -0.29
HOXA1P49639 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
HOXA1P49639 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC13.22□□□□□ -0.29
HOXA1P49639 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC13.22□□□□□ -0.29
HOXA1P49639 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
HOXA1P49639 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.22□□□□□ -0.29
HOXA1P49639 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms