Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC13.01□□□□□ -0.33
CDX1P47902 STARD13-205ENST00000439831 945 ntTSL 2 BASIC13.01□□□□□ -0.33
CDX1P47902 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC13.01□□□□□ -0.33
CDX1P47902 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC13.01□□□□□ -0.33
CDX1P47902 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC13.01□□□□□ -0.33
CDX1P47902 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 IGHV3OR16-6-201ENST00000568775 360 ntBASIC13.01□□□□□ -0.33
CDX1P47902 CD7-202ENST00000578509 925 ntTSL 3 BASIC13.01□□□□□ -0.33
CDX1P47902 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC13.01□□□□□ -0.33
CDX1P47902 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 AKAP8P1-201ENST00000434743 1349 ntBASIC13.01□□□□□ -0.33
CDX1P47902 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
CDX1P47902 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
CDX1P47902 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC13.01□□□□□ -0.33
CDX1P47902 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC13.01□□□□□ -0.33
CDX1P47902 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
CDX1P47902 LINC01101-201ENST00000622953 1884 ntBASIC13.01□□□□□ -0.33
CDX1P47902 ALOX12P2-203ENST00000570921 1945 ntBASIC13.01□□□□□ -0.33
CDX1P47902 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC13.01□□□□□ -0.33
CDX1P47902 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC13.01□□□□□ -0.33
CDX1P47902 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.01□□□□□ -0.33
CDX1P47902 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC13.01□□□□□ -0.33
CDX1P47902 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.01□□□□□ -0.33
CDX1P47902 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
CDX1P47902 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CDX1P47902 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CDX1P47902 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13□□□□□ -0.33
CDX1P47902 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CDX1P47902 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13□□□□□ -0.33
CDX1P47902 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
CDX1P47902 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 MIR600HG-201ENST00000449175 5984 ntBASIC13□□□□□ -0.33
CDX1P47902 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC13□□□□□ -0.33
CDX1P47902 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC13□□□□□ -0.33
CDX1P47902 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
CDX1P47902 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
CDX1P47902 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC13□□□□□ -0.33
CDX1P47902 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC13□□□□□ -0.33
CDX1P47902 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC13□□□□□ -0.33
CDX1P47902 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 STOM-202ENST00000347359 870 ntTSL 2 BASIC13□□□□□ -0.33
CDX1P47902 RNU1-129P-201ENST00000384064 167 ntBASIC13□□□□□ -0.33
CDX1P47902 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC13□□□□□ -0.33
CDX1P47902 AC092474.2-201ENST00000424288 719 ntBASIC13□□□□□ -0.33
CDX1P47902 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC13□□□□□ -0.33
CDX1P47902 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC13□□□□□ -0.33
CDX1P47902 RN7SL589P-201ENST00000481268 310 ntBASIC13□□□□□ -0.33
CDX1P47902 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC13□□□□□ -0.33
CDX1P47902 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC13□□□□□ -0.33
CDX1P47902 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC13□□□□□ -0.33
CDX1P47902 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC13□□□□□ -0.33
CDX1P47902 U1.21-201ENST00000580816 167 ntBASIC13□□□□□ -0.33
CDX1P47902 MIR4492-201ENST00000581627 80 ntBASIC13□□□□□ -0.33
CDX1P47902 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC13□□□□□ -0.33
CDX1P47902 AC004835.2-201ENST00000603762 682 ntBASIC13□□□□□ -0.33
CDX1P47902 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 AC026120.1-201ENST00000611536 926 ntBASIC13□□□□□ -0.33
CDX1P47902 AL513210.1-201ENST00000629608 234 ntBASIC13□□□□□ -0.33
CDX1P47902 AC105339.1-204ENST00000636249 355 ntBASIC13□□□□□ -0.33
CDX1P47902 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC13□□□□□ -0.33
CDX1P47902 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13□□□□□ -0.33
CDX1P47902 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC13□□□□□ -0.33
CDX1P47902 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
CDX1P47902 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
CDX1P47902 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC13□□□□□ -0.33
CDX1P47902 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
CDX1P47902 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms