Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
NKX2-1P43699 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-1P43699 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-1P43699 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-1P43699 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
NKX2-1P43699 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.03□□□□□ -0.32
NKX2-1P43699 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-1P43699 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.32
NKX2-1P43699 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-1P43699 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-1P43699 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-1P43699 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13.02□□□□□ -0.32
NKX2-1P43699 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-1P43699 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-1P43699 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-1P43699 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.02□□□□□ -0.32
NKX2-1P43699 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-1P43699 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-1P43699 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
NKX2-1P43699 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC13.02□□□□□ -0.32
NKX2-1P43699 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-1P43699 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-1P43699 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC13.02□□□□□ -0.33
NKX2-1P43699 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-1P43699 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC13.02□□□□□ -0.33
NKX2-1P43699 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.02□□□□□ -0.33
NKX2-1P43699 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC13.02□□□□□ -0.33
NKX2-1P43699 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC13.02□□□□□ -0.33
NKX2-1P43699 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-1P43699 AP002469.2-201ENST00000531724 424 ntBASIC13.02□□□□□ -0.33
NKX2-1P43699 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC13.02□□□□□ -0.33
NKX2-1P43699 MIR3909-201ENST00000579518 119 ntBASIC13.02□□□□□ -0.33
NKX2-1P43699 AL031055.1-201ENST00000606362 631 ntBASIC13.02□□□□□ -0.33
NKX2-1P43699 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC13.02□□□□□ -0.33
NKX2-1P43699 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC13.02□□□□□ -0.33
NKX2-1P43699 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.33
NKX2-1P43699 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-1P43699 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC13.02□□□□□ -0.33
NKX2-1P43699 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-1P43699 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.02□□□□□ -0.33
NKX2-1P43699 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
NKX2-1P43699 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.02□□□□□ -0.33
NKX2-1P43699 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.02□□□□□ -0.33
NKX2-1P43699 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.33
NKX2-1P43699 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
NKX2-1P43699 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-1P43699 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-1P43699 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-1P43699 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-1P43699 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
NKX2-1P43699 AC134407.2-201ENST00000625089 1978 ntBASIC13.01□□□□□ -0.33
NKX2-1P43699 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
NKX2-1P43699 AC009090.5-201ENST00000624886 2285 ntBASIC13.01□□□□□ -0.33
NKX2-1P43699 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.01□□□□□ -0.33
NKX2-1P43699 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.01□□□□□ -0.33
NKX2-1P43699 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 EMD-201ENST00000369835 966 ntTSL 3 BASIC13.01□□□□□ -0.33
NKX2-1P43699 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 PMS2P4-201ENST00000412466 1052 ntBASIC13.01□□□□□ -0.33
NKX2-1P43699 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC13.01□□□□□ -0.33
NKX2-1P43699 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
NKX2-1P43699 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
NKX2-1P43699 MIR4515-201ENST00000584082 81 ntBASIC13.01□□□□□ -0.33
NKX2-1P43699 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC13.01□□□□□ -0.33
NKX2-1P43699 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
NKX2-1P43699 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC13.01□□□□□ -0.33
NKX2-1P43699 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.01□□□□□ -0.33
NKX2-1P43699 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.01□□□□□ -0.33
NKX2-1P43699 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
NKX2-1P43699 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.01□□□□□ -0.33
NKX2-1P43699 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
NKX2-1P43699 ADAMTS7P1-201ENST00000613213 4793 ntBASIC13□□□□□ -0.33
NKX2-1P43699 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
NKX2-1P43699 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
NKX2-1P43699 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms