Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC19.41■□□□□ 0.7
COL5A3P25940 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL5A3P25940 AC004899.1-201ENST00000424687 1714 ntBASIC19.41■□□□□ 0.7
COL5A3P25940 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A3P25940 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL5A3P25940 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A3P25940 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A3P25940 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL5A3P25940 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC19.4■□□□□ 0.7
COL5A3P25940 RPL17P11-201ENST00000417593 544 ntBASIC19.4■□□□□ 0.7
COL5A3P25940 CEP164P1-201ENST00000455142 418 ntBASIC19.4■□□□□ 0.7
COL5A3P25940 RN7SL181P-201ENST00000462921 277 ntBASIC19.4■□□□□ 0.7
COL5A3P25940 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC19.4■□□□□ 0.7
COL5A3P25940 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC19.4■□□□□ 0.7
COL5A3P25940 PRKXP1-201ENST00000561423 1122 ntBASIC19.4■□□□□ 0.7
COL5A3P25940 INO80C-210ENST00000590757 595 ntTSL 2 BASIC19.4■□□□□ 0.7
COL5A3P25940 AC132192.2-201ENST00000596206 1147 ntBASIC19.4■□□□□ 0.7
COL5A3P25940 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A3P25940 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A3P25940 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
COL5A3P25940 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A3P25940 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC19.4■□□□□ 0.7
COL5A3P25940 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
COL5A3P25940 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A3P25940 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
COL5A3P25940 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL5A3P25940 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A3P25940 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
COL5A3P25940 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
COL5A3P25940 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A3P25940 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC19.4■□□□□ 0.7
COL5A3P25940 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL5A3P25940 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
COL5A3P25940 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC19.39■□□□□ 0.7
COL5A3P25940 AC234782.1-201ENST00000451950 919 ntBASIC19.39■□□□□ 0.7
COL5A3P25940 MPRIPP1-201ENST00000452433 1089 ntBASIC19.39■□□□□ 0.7
COL5A3P25940 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC19.39■□□□□ 0.7
COL5A3P25940 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC19.39■□□□□ 0.7
COL5A3P25940 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
COL5A3P25940 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.7
COL5A3P25940 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC19.39■□□□□ 0.7
COL5A3P25940 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC19.39■□□□□ 0.7
COL5A3P25940 AC100757.4-201ENST00000626934 759 ntBASIC19.39■□□□□ 0.7
COL5A3P25940 ILF3-AS1-201ENST00000591501 1983 ntBASIC19.39■□□□□ 0.69
COL5A3P25940 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A3P25940 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A3P25940 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A3P25940 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A3P25940 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
COL5A3P25940 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A3P25940 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A3P25940 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.39■□□□□ 0.69
COL5A3P25940 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A3P25940 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.39■□□□□ 0.69
COL5A3P25940 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A3P25940 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
COL5A3P25940 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A3P25940 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC19.39■□□□□ 0.69
COL5A3P25940 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC19.39■□□□□ 0.69
COL5A3P25940 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC19.39■□□□□ 0.69
COL5A3P25940 MAGEA5-201ENST00000446757 942 ntBASIC19.39■□□□□ 0.69
COL5A3P25940 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC19.39■□□□□ 0.69
COL5A3P25940 AC125604.1-201ENST00000496255 707 ntBASIC19.39■□□□□ 0.69
COL5A3P25940 AC005740.2-201ENST00000511085 419 ntBASIC19.39■□□□□ 0.69
COL5A3P25940 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC19.39■□□□□ 0.69
COL5A3P25940 AL161670.2-201ENST00000557650 1227 ntBASIC19.39■□□□□ 0.69
COL5A3P25940 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC19.39■□□□□ 0.69
COL5A3P25940 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
COL5A3P25940 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.39■□□□□ 0.69
COL5A3P25940 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A3P25940 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A3P25940 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL5A3P25940 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
COL5A3P25940 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.38■□□□□ 0.69
COL5A3P25940 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
COL5A3P25940 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.38■□□□□ 0.69
COL5A3P25940 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A3P25940 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
COL5A3P25940 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A3P25940 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.38■□□□□ 0.69
COL5A3P25940 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A3P25940 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A3P25940 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC19.38■□□□□ 0.69
COL5A3P25940 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A3P25940 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A3P25940 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC19.38■□□□□ 0.69
COL5A3P25940 AL133466.1-201ENST00000447582 150 ntBASIC19.38■□□□□ 0.69
COL5A3P25940 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
COL5A3P25940 AC090164.2-201ENST00000611487 516 ntBASIC19.38■□□□□ 0.69
COL5A3P25940 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC19.38■□□□□ 0.69
COL5A3P25940 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A3P25940 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
COL5A3P25940 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A3P25940 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.38■□□□□ 0.69
COL5A3P25940 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL5A3P25940 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL5A3P25940 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms