Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.98■□□□□ 0.15
VCANP13611 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
VCANP13611 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.98■□□□□ 0.15
VCANP13611 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
VCANP13611 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC15.98■□□□□ 0.15
VCANP13611 AC021723.1-201ENST00000486306 515 ntBASIC15.98■□□□□ 0.15
VCANP13611 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.98■□□□□ 0.15
VCANP13611 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC15.98■□□□□ 0.15
VCANP13611 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC15.98■□□□□ 0.15
VCANP13611 AC027237.1-201ENST00000560942 655 ntBASIC15.98■□□□□ 0.15
VCANP13611 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC15.98■□□□□ 0.15
VCANP13611 AC005632.3-201ENST00000605544 308 ntBASIC15.98■□□□□ 0.15
VCANP13611 AC021016.3-201ENST00000608367 477 ntBASIC15.98■□□□□ 0.15
VCANP13611 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
VCANP13611 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.98■□□□□ 0.15
VCANP13611 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.98■□□□□ 0.15
VCANP13611 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
VCANP13611 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 AC084262.1-201ENST00000567818 751 ntBASIC15.98■□□□□ 0.15
VCANP13611 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
VCANP13611 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
VCANP13611 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
VCANP13611 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
VCANP13611 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
VCANP13611 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
VCANP13611 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
VCANP13611 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VCANP13611 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
VCANP13611 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VCANP13611 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.97■□□□□ 0.15
VCANP13611 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.97■□□□□ 0.15
VCANP13611 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VCANP13611 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
VCANP13611 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
VCANP13611 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC15.97■□□□□ 0.15
VCANP13611 SLED1-202ENST00000512051 380 ntBASIC15.97■□□□□ 0.15
VCANP13611 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
VCANP13611 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.97■□□□□ 0.15
VCANP13611 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VCANP13611 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
VCANP13611 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
VCANP13611 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.97■□□□□ 0.15
VCANP13611 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.97■□□□□ 0.15
VCANP13611 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
VCANP13611 AC134407.2-201ENST00000625089 1978 ntBASIC15.97■□□□□ 0.15
VCANP13611 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.97■□□□□ 0.15
VCANP13611 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.97■□□□□ 0.15
VCANP13611 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC15.97■□□□□ 0.15
VCANP13611 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC15.97■□□□□ 0.15
VCANP13611 STUB1-204ENST00000564370 875 ntTSL 2 BASIC15.97■□□□□ 0.15
VCANP13611 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC15.97■□□□□ 0.15
VCANP13611 ELP5-212ENST00000574255 671 ntTSL 2 BASIC15.97■□□□□ 0.15
VCANP13611 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC15.97■□□□□ 0.15
VCANP13611 PCBP2-OT1-201ENST00000634357 590 ntBASIC15.97■□□□□ 0.15
VCANP13611 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.97■□□□□ 0.15
VCANP13611 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.97■□□□□ 0.15
VCANP13611 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VCANP13611 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
VCANP13611 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.97■□□□□ 0.15
VCANP13611 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VCANP13611 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
VCANP13611 OR2K2-202ENST00000374428 1038 ntBASIC15.96■□□□□ 0.15
VCANP13611 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC15.96■□□□□ 0.15
VCANP13611 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC15.96■□□□□ 0.15
VCANP13611 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms