Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
HLA-DQB2P05538 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.02■□□□□ 0.15
HLA-DQB2P05538 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DQB2P05538 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DQB2P05538 AC013268.4-201ENST00000637413 2228 ntBASIC16.02■□□□□ 0.15
HLA-DQB2P05538 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
HLA-DQB2P05538 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DQB2P05538 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 RPL13P2-201ENST00000440687 659 ntBASIC16.01■□□□□ 0.15
HLA-DQB2P05538 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 AC093214.1-201ENST00000511688 1107 ntBASIC16.01■□□□□ 0.15
HLA-DQB2P05538 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 SDHAP3-202ENST00000515467 728 ntBASIC16.01■□□□□ 0.15
HLA-DQB2P05538 AC009407.1-201ENST00000568958 598 ntBASIC16.01■□□□□ 0.15
HLA-DQB2P05538 AC027796.2-201ENST00000575326 344 ntBASIC16.01■□□□□ 0.15
HLA-DQB2P05538 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DQB2P05538 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
HLA-DQB2P05538 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16■□□□□ 0.15
HLA-DQB2P05538 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16■□□□□ 0.15
HLA-DQB2P05538 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC16■□□□□ 0.15
HLA-DQB2P05538 TMBIM7P-203ENST00000641617 1718 ntBASIC16■□□□□ 0.15
HLA-DQB2P05538 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16■□□□□ 0.15
HLA-DQB2P05538 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
HLA-DQB2P05538 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16■□□□□ 0.15
HLA-DQB2P05538 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
HLA-DQB2P05538 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16■□□□□ 0.15
HLA-DQB2P05538 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16■□□□□ 0.15
HLA-DQB2P05538 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16■□□□□ 0.15
HLA-DQB2P05538 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
HLA-DQB2P05538 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
HLA-DQB2P05538 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16■□□□□ 0.15
HLA-DQB2P05538 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16■□□□□ 0.15
HLA-DQB2P05538 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16■□□□□ 0.15
HLA-DQB2P05538 DUT-210ENST00000559935 569 ntTSL 3 BASIC16■□□□□ 0.15
HLA-DQB2P05538 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16■□□□□ 0.15
HLA-DQB2P05538 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16■□□□□ 0.15
HLA-DQB2P05538 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
HLA-DQB2P05538 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16■□□□□ 0.15
HLA-DQB2P05538 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
HLA-DQB2P05538 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16■□□□□ 0.15
HLA-DQB2P05538 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
HLA-DQB2P05538 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
HLA-DQB2P05538 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16■□□□□ 0.15
HLA-DQB2P05538 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16■□□□□ 0.15
HLA-DQB2P05538 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
HLA-DQB2P05538 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DQB2P05538 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DQB2P05538 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DQB2P05538 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DQB2P05538 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DQB2P05538 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms