Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CTDNEP1O95476 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC18.25■□□□□ 0.51
CTDNEP1O95476 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTDNEP1O95476 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTDNEP1O95476 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTDNEP1O95476 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CTDNEP1O95476 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTDNEP1O95476 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTDNEP1O95476 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.25■□□□□ 0.51
CTDNEP1O95476 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTDNEP1O95476 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTDNEP1O95476 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CTDNEP1O95476 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CTDNEP1O95476 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 METTL21AP1-201ENST00000438852 635 ntBASIC18.24■□□□□ 0.51
CTDNEP1O95476 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 SLED1-202ENST00000512051 380 ntBASIC18.24■□□□□ 0.51
CTDNEP1O95476 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 AC044860.1-202ENST00000559481 777 ntBASIC18.24■□□□□ 0.51
CTDNEP1O95476 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 AL590560.3-201ENST00000623350 461 ntBASIC18.24■□□□□ 0.51
CTDNEP1O95476 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CTDNEP1O95476 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
CTDNEP1O95476 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.23■□□□□ 0.51
CTDNEP1O95476 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTDNEP1O95476 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CTDNEP1O95476 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTDNEP1O95476 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC18.23■□□□□ 0.51
CTDNEP1O95476 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CTDNEP1O95476 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC18.23■□□□□ 0.51
CTDNEP1O95476 AC148477.4-201ENST00000613430 1793 ntBASIC18.23■□□□□ 0.51
CTDNEP1O95476 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTDNEP1O95476 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CTDNEP1O95476 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.23■□□□□ 0.51
CTDNEP1O95476 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CTDNEP1O95476 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
CTDNEP1O95476 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTDNEP1O95476 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC18.23■□□□□ 0.51
CTDNEP1O95476 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC18.23■□□□□ 0.51
CTDNEP1O95476 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.23■□□□□ 0.51
CTDNEP1O95476 CICP11-201ENST00000434745 2827 ntBASIC18.23■□□□□ 0.51
CTDNEP1O95476 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTDNEP1O95476 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
CTDNEP1O95476 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTDNEP1O95476 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTDNEP1O95476 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTDNEP1O95476 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CTDNEP1O95476 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CTDNEP1O95476 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
CTDNEP1O95476 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CTDNEP1O95476 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC18.23■□□□□ 0.51
CTDNEP1O95476 AC100757.3-201ENST00000622361 1406 ntBASIC18.23■□□□□ 0.51
CTDNEP1O95476 AC087499.5-201ENST00000452760 1342 ntBASIC18.23■□□□□ 0.51
CTDNEP1O95476 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTDNEP1O95476 LINC00528-201ENST00000600723 2160 ntBASIC18.23■□□□□ 0.51
CTDNEP1O95476 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CTDNEP1O95476 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC18.22■□□□□ 0.51
CTDNEP1O95476 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CTDNEP1O95476 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms