Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
USH2AO75445 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC6.87□□□□□ -1.31
USH2AO75445 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC6.87□□□□□ -1.31
USH2AO75445 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 MIR557-201ENST00000385239 98 ntBASIC6.87□□□□□ -1.31
USH2AO75445 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC6.87□□□□□ -1.31
USH2AO75445 AC114812.1-204ENST00000449669 728 ntBASIC6.87□□□□□ -1.31
USH2AO75445 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
USH2AO75445 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC6.87□□□□□ -1.31
USH2AO75445 AC097359.3-201ENST00000603982 1210 ntBASIC6.87□□□□□ -1.31
USH2AO75445 AC090164.2-201ENST00000611487 516 ntBASIC6.87□□□□□ -1.31
USH2AO75445 AC015909.3-201ENST00000572855 1794 ntBASIC6.87□□□□□ -1.31
USH2AO75445 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC6.87□□□□□ -1.31
USH2AO75445 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
USH2AO75445 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC6.87□□□□□ -1.31
USH2AO75445 NEFHP1-201ENST00000412845 2629 ntBASIC6.87□□□□□ -1.31
USH2AO75445 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC6.87□□□□□ -1.31
USH2AO75445 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC6.87□□□□□ -1.31
USH2AO75445 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 RNU1-114P-201ENST00000365297 166 ntBASIC6.87□□□□□ -1.31
USH2AO75445 Z69890.1-201ENST00000382990 339 ntBASIC6.87□□□□□ -1.31
USH2AO75445 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC6.87□□□□□ -1.31
USH2AO75445 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC6.87□□□□□ -1.31
USH2AO75445 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC6.87□□□□□ -1.31
USH2AO75445 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC6.87□□□□□ -1.31
USH2AO75445 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 RNF216P1-203ENST00000404404 2427 ntBASIC6.87□□□□□ -1.31
USH2AO75445 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC6.87□□□□□ -1.31
USH2AO75445 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC6.87□□□□□ -1.31
USH2AO75445 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
USH2AO75445 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC6.87□□□□□ -1.31
USH2AO75445 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC6.87□□□□□ -1.31
USH2AO75445 AL135901.1-201ENST00000451812 333 ntBASIC6.87□□□□□ -1.31
USH2AO75445 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC6.87□□□□□ -1.31
USH2AO75445 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC6.87□□□□□ -1.31
USH2AO75445 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 POLD4-208ENST00000532830 904 ntTSL 3 BASIC6.87□□□□□ -1.31
USH2AO75445 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC6.87□□□□□ -1.31
USH2AO75445 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC6.87□□□□□ -1.31
USH2AO75445 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC6.87□□□□□ -1.31
USH2AO75445 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC6.87□□□□□ -1.31
USH2AO75445 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC6.87□□□□□ -1.31
USH2AO75445 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC6.87□□□□□ -1.31
USH2AO75445 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC6.87□□□□□ -1.31
USH2AO75445 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC6.87□□□□□ -1.31
USH2AO75445 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
USH2AO75445 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
USH2AO75445 AMT-206ENST00000458307 1860 ntTSL 2 BASIC6.86□□□□□ -1.31
USH2AO75445 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC6.86□□□□□ -1.31
USH2AO75445 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
USH2AO75445 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
USH2AO75445 RPL14-203ENST00000416518 812 ntTSL 3 BASIC6.86□□□□□ -1.31
USH2AO75445 RPL7P35-201ENST00000446943 740 ntBASIC6.86□□□□□ -1.31
USH2AO75445 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC6.86□□□□□ -1.31
USH2AO75445 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC6.86□□□□□ -1.31
USH2AO75445 AC018846.1-201ENST00000568231 183 ntBASIC6.86□□□□□ -1.31
USH2AO75445 IRF3-215ENST00000596822 823 ntTSL 3 BASIC6.86□□□□□ -1.31
USH2AO75445 AC009955.4-201ENST00000597192 544 ntBASIC6.86□□□□□ -1.31
USH2AO75445 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC6.86□□□□□ -1.31
USH2AO75445 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
USH2AO75445 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
USH2AO75445 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC6.86□□□□□ -1.31
USH2AO75445 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC6.86□□□□□ -1.31
USH2AO75445 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
USH2AO75445 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC6.86□□□□□ -1.31
USH2AO75445 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC6.86□□□□□ -1.31
USH2AO75445 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
USH2AO75445 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
USH2AO75445 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
USH2AO75445 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
USH2AO75445 AL592424.1-201ENST00000563624 1536 ntBASIC6.86□□□□□ -1.31
USH2AO75445 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
USH2AO75445 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC6.86□□□□□ -1.31
USH2AO75445 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
USH2AO75445 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC6.86□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms