Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.7■□□□□ 0.42
COL4A3BPQ9Y5P4 AP003680.1-201ENST00000598970 3660 ntBASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 AC015922.1-201ENST00000421102 1152 ntBASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 AC114501.2-201ENST00000439631 535 ntBASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 CRB3P1-201ENST00000449338 276 ntBASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 AL109936.8-201ENST00000641772 604 ntBASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A3BPQ9Y5P4 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 RASL12-203ENST00000434605 982 ntTSL 2 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 SPDYE18-201ENST00000510091 1050 ntBASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 AC018892.3-201ENST00000623986 2499 ntBASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
COL4A3BPQ9Y5P4 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.67■□□□□ 0.42
COL4A3BPQ9Y5P4 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC17.67■□□□□ 0.42
COL4A3BPQ9Y5P4 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
COL4A3BPQ9Y5P4 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
COL4A3BPQ9Y5P4 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
COL4A3BPQ9Y5P4 FER1L4-210ENST00000615531 5998 ntBASIC17.67■□□□□ 0.42
COL4A3BPQ9Y5P4 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.67■□□□□ 0.42
COL4A3BPQ9Y5P4 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
COL4A3BPQ9Y5P4 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A3BPQ9Y5P4 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A3BPQ9Y5P4 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A3BPQ9Y5P4 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.67■□□□□ 0.42
COL4A3BPQ9Y5P4 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
COL4A3BPQ9Y5P4 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.67■□□□□ 0.42
COL4A3BPQ9Y5P4 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms