Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDHGA1Q9Y5H4 CICP6-201ENST00000457191 2729 ntBASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 AP001282.1-201ENST00000531301 1499 ntBASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 CALR4P-201ENST00000431943 946 ntBASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 KRT18P64-201ENST00000434946 1219 ntBASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 KRT18P43-201ENST00000469825 1281 ntBASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 MSTO2P-201ENST00000314835 1709 ntBASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 AC022211.2-201ENST00000585075 2527 ntBASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.16■□□□□ 0.02
PCDHGA1Q9Y5H4 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 AC026410.3-201ENST00000514280 936 ntBASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 AC025279.2-201ENST00000569730 653 ntBASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 MST1L-201ENST00000442552 2185 ntBASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDHGA1Q9Y5H4 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCDHGA1Q9Y5H4 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms