Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 DNAJB3-202ENST00000449667 1266 ntBASIC12.85□□□□□ -0.35
FOXA2Q9Y261 AC069335.1-201ENST00000489972 472 ntBASIC12.85□□□□□ -0.35
FOXA2Q9Y261 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 AP000842.3-202ENST00000569238 1080 ntBASIC12.85□□□□□ -0.35
FOXA2Q9Y261 PAM16-215ENST00000577031 548 ntTSL 4 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 LRRFIP1P1-201ENST00000498774 2246 ntBASIC12.85□□□□□ -0.35
FOXA2Q9Y261 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 ILF3-AS1-201ENST00000591501 1983 ntBASIC12.85□□□□□ -0.35
FOXA2Q9Y261 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC12.85□□□□□ -0.35
FOXA2Q9Y261 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 FLII-221ENST00000578558 2377 ntTSL 5 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 LINC01225-203ENST00000563550 1244 ntBASIC12.84□□□□□ -0.35
FOXA2Q9Y261 AC061975.2-201ENST00000581722 295 ntBASIC12.84□□□□□ -0.35
FOXA2Q9Y261 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 GPALPP1-207ENST00000611650 899 ntBASIC12.84□□□□□ -0.35
FOXA2Q9Y261 SPTSSB-204ENST00000617024 1292 ntBASIC12.84□□□□□ -0.35
FOXA2Q9Y261 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 PGR-210ENST00000619228 3038 ntTSL 5 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 GOLGA2P9-201ENST00000596977 1937 ntBASIC12.84□□□□□ -0.35
FOXA2Q9Y261 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
FOXA2Q9Y261 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC12.83□□□□□ -0.35
FOXA2Q9Y261 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
FOXA2Q9Y261 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
FOXA2Q9Y261 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 AC092127.1-201ENST00000567093 3455 ntBASIC12.83□□□□□ -0.36
FOXA2Q9Y261 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC12.83□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms