Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMD1Q9UGP4 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMD1Q9UGP4 PCGF3-213ENST00000620529 1899 ntBASIC16.5■□□□□ 0.23
LIMD1Q9UGP4 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMD1Q9UGP4 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
LIMD1Q9UGP4 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.5■□□□□ 0.23
LIMD1Q9UGP4 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.5■□□□□ 0.23
LIMD1Q9UGP4 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LIMD1Q9UGP4 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 ELK2AP-201ENST00000392510 1007 ntBASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 AZGP1P1-201ENST00000411909 902 ntBASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 AC026954.1-201ENST00000429771 1293 ntBASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 AC079328.2-201ENST00000561241 3354 ntBASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 AL118558.3-201ENST00000607414 1079 ntBASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 DOC2GP-204ENST00000639052 2548 ntBASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.49■□□□□ 0.23
LIMD1Q9UGP4 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 RIT1-205ENST00000539040 919 ntTSL 2 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 AC079316.1-201ENST00000548397 411 ntBASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 C2orf69P2-201ENST00000562032 1123 ntBASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 RN7SL121P-201ENST00000584223 273 ntBASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LIMD1Q9UGP4 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 AC134312.5-201ENST00000568031 1313 ntBASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
LIMD1Q9UGP4 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms