Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 AC009090.5-201ENST00000624886 2285 ntBASIC17.73■□□□□ 0.43
COL20A1Q9P218 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL20A1Q9P218 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL20A1Q9P218 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL20A1Q9P218 AC005229.1-201ENST00000392885 409 ntBASIC17.73■□□□□ 0.43
COL20A1Q9P218 AC092933.1-201ENST00000393644 945 ntBASIC17.73■□□□□ 0.43
COL20A1Q9P218 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 BAATP1-201ENST00000412284 1225 ntBASIC17.73■□□□□ 0.43
COL20A1Q9P218 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL20A1Q9P218 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 PTP4A1P2-201ENST00000546033 454 ntBASIC17.73■□□□□ 0.43
COL20A1Q9P218 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 AP001063.1-201ENST00000568332 529 ntBASIC17.73■□□□□ 0.43
COL20A1Q9P218 IFT20-206ENST00000578122 834 ntTSL 2 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 IFT20-208ENST00000578985 831 ntTSL 3 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL20A1Q9P218 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
COL20A1Q9P218 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL20A1Q9P218 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 AC092127.1-201ENST00000567093 3455 ntBASIC17.73■□□□□ 0.43
COL20A1Q9P218 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL20A1Q9P218 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL20A1Q9P218 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.73■□□□□ 0.43
COL20A1Q9P218 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL20A1Q9P218 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 PCDHA1-201ENST00000378133 2726 ntBASIC17.72■□□□□ 0.43
COL20A1Q9P218 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.72■□□□□ 0.43
COL20A1Q9P218 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 AC012441.1-201ENST00000446669 685 ntBASIC17.72■□□□□ 0.43
COL20A1Q9P218 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL20A1Q9P218 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 AL513523.2-202ENST00000427283 2040 ntBASIC17.72■□□□□ 0.43
COL20A1Q9P218 AC026691.1-201ENST00000602502 2017 ntBASIC17.72■□□□□ 0.43
COL20A1Q9P218 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.72■□□□□ 0.43
COL20A1Q9P218 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL20A1Q9P218 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.71■□□□□ 0.43
COL20A1Q9P218 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL20A1Q9P218 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL20A1Q9P218 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.43
COL20A1Q9P218 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
COL20A1Q9P218 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL20A1Q9P218 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL20A1Q9P218 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL20A1Q9P218 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL20A1Q9P218 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL20A1Q9P218 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL20A1Q9P218 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.71■□□□□ 0.43
COL20A1Q9P218 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL20A1Q9P218 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL20A1Q9P218 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC17.71■□□□□ 0.43
COL20A1Q9P218 KRT223P-202ENST00000449164 1292 ntBASIC17.71■□□□□ 0.43
COL20A1Q9P218 BNIP3P42-201ENST00000454982 569 ntBASIC17.71■□□□□ 0.43
COL20A1Q9P218 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
COL20A1Q9P218 AC104989.1-201ENST00000519711 778 ntBASIC17.71■□□□□ 0.43
COL20A1Q9P218 AP001582.1-201ENST00000525856 295 ntBASIC17.71■□□□□ 0.43
COL20A1Q9P218 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.71■□□□□ 0.43
COL20A1Q9P218 GNRHR2-203ENST00000581100 1187 ntBASIC17.71■□□□□ 0.43
COL20A1Q9P218 BNIP3P29-201ENST00000598302 571 ntBASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms