Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 AC020914.3-201ENST00000594712 304 ntBASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 HCG18-245ENST00000602550 559 ntTSL 4 BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 ECM1P1-201ENST00000604092 1279 ntBASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 SNX1-214ENST00000625244 324 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CCDC87Q9NVE4 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 AC015818.8-201ENST00000587907 1519 ntBASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 ADM-202ENST00000524948 584 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 AC105129.2-201ENST00000559536 390 ntBASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 CYGB-203ENST00000589145 788 ntTSL 3 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 AL096828.3-201ENST00000615354 462 ntBASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CCDC87Q9NVE4 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 FXNP2-201ENST00000411625 547 ntBASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 FNTAP2-201ENST00000430308 634 ntBASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 BX284668.4-201ENST00000453917 508 ntBASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 UPF3AP2-201ENST00000457924 1132 ntBASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CCDC87Q9NVE4 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC87Q9NVE4 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.75
CCDC87Q9NVE4 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CCDC87Q9NVE4 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 NUS1P3-201ENST00000423502 862 ntBASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 AC114812.1-204ENST00000449669 728 ntBASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC19.76■□□□□ 0.75
CCDC87Q9NVE4 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CCDC87Q9NVE4 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms