Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.92■□□□□ 0.3
SIX2Q9NPC8 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 HLA-V-204ENST00000476601 1289 ntBASIC16.92■□□□□ 0.3
SIX2Q9NPC8 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 AC023511.2-201ENST00000618803 211 ntBASIC16.92■□□□□ 0.3
SIX2Q9NPC8 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 AGAP7P-201ENST00000582299 2062 ntBASIC16.92■□□□□ 0.3
SIX2Q9NPC8 AGAP14-201ENST00000624701 2060 ntBASIC16.92■□□□□ 0.3
SIX2Q9NPC8 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
SIX2Q9NPC8 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 FO538757.1-201ENST00000623083 1397 ntBASIC16.91■□□□□ 0.3
SIX2Q9NPC8 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 MIR1233-2-201ENST00000408138 82 ntBASIC16.91■□□□□ 0.3
SIX2Q9NPC8 MIR1233-1-201ENST00000408722 82 ntBASIC16.91■□□□□ 0.3
SIX2Q9NPC8 RPL13P2-201ENST00000440687 659 ntBASIC16.91■□□□□ 0.3
SIX2Q9NPC8 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 AC010336.2-201ENST00000564226 506 ntBASIC16.91■□□□□ 0.3
SIX2Q9NPC8 AC051619.7-201ENST00000568314 623 ntBASIC16.91■□□□□ 0.3
SIX2Q9NPC8 AL691403.2-201ENST00000618460 490 ntBASIC16.91■□□□□ 0.3
SIX2Q9NPC8 MIR6069-201ENST00000620069 79 ntBASIC16.91■□□□□ 0.3
SIX2Q9NPC8 AF228730.6-201ENST00000641497 218 ntBASIC16.91■□□□□ 0.3
SIX2Q9NPC8 AC084121.3-201ENST00000641716 218 ntBASIC16.91■□□□□ 0.3
SIX2Q9NPC8 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX2Q9NPC8 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SIX2Q9NPC8 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms