Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 FAM185BP-201ENST00000443595 716 ntBASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CHMP1AQ9HD42 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 CENPM-204ENST00000402420 688 ntTSL 5 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 PMS2P4-201ENST00000412466 1052 ntBASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 CD63-210ENST00000550776 870 ntTSL 5 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 AL031432.2-201ENST00000566714 459 ntBASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 AL928711.1-201ENST00000570165 459 ntBASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 ACTL9-202ENST00000612068 1252 ntBASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 AL645728.2-201ENST00000641974 660 ntBASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 AC016027.1-202ENST00000607927 1699 ntBASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
CHMP1AQ9HD42 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CHMP1AQ9HD42 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms