Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC18.1■□□□□ 0.49
USP28Q96RU2 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.1■□□□□ 0.49
USP28Q96RU2 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.1■□□□□ 0.49
USP28Q96RU2 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.1■□□□□ 0.49
USP28Q96RU2 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
USP28Q96RU2 AC126365.1-201ENST00000578585 1514 ntBASIC18.1■□□□□ 0.49
USP28Q96RU2 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.1■□□□□ 0.49
USP28Q96RU2 AL627223.1-201ENST00000416693 442 ntBASIC18.1■□□□□ 0.49
USP28Q96RU2 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.1■□□□□ 0.49
USP28Q96RU2 YBX1P5-201ENST00000509441 847 ntBASIC18.1■□□□□ 0.49
USP28Q96RU2 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.1■□□□□ 0.49
USP28Q96RU2 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.1■□□□□ 0.49
USP28Q96RU2 MIR4469-201ENST00000583919 79 ntBASIC18.1■□□□□ 0.49
USP28Q96RU2 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.1■□□□□ 0.49
USP28Q96RU2 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
USP28Q96RU2 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC18.1■□□□□ 0.49
USP28Q96RU2 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.1■□□□□ 0.49
USP28Q96RU2 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
USP28Q96RU2 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC18.1■□□□□ 0.49
USP28Q96RU2 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
USP28Q96RU2 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
USP28Q96RU2 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
USP28Q96RU2 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC18.09■□□□□ 0.49
USP28Q96RU2 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC18.09■□□□□ 0.49
USP28Q96RU2 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
USP28Q96RU2 RBM39-205ENST00000397370 612 ntTSL 2 BASIC18.09■□□□□ 0.49
USP28Q96RU2 KRT18P32-201ENST00000424695 1287 ntBASIC18.09■□□□□ 0.49
USP28Q96RU2 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.09■□□□□ 0.49
USP28Q96RU2 HIST3H2BA-201ENST00000436555 524 ntBASIC18.09■□□□□ 0.49
USP28Q96RU2 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.09■□□□□ 0.49
USP28Q96RU2 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.09■□□□□ 0.49
USP28Q96RU2 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.09■□□□□ 0.49
USP28Q96RU2 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.09■□□□□ 0.49
USP28Q96RU2 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.09■□□□□ 0.49
USP28Q96RU2 AGAP7P-201ENST00000582299 2062 ntBASIC18.09■□□□□ 0.49
USP28Q96RU2 AGAP14-201ENST00000624701 2060 ntBASIC18.09■□□□□ 0.49
USP28Q96RU2 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
USP28Q96RU2 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
USP28Q96RU2 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.09■□□□□ 0.49
USP28Q96RU2 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP28Q96RU2 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP28Q96RU2 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
USP28Q96RU2 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP28Q96RU2 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
USP28Q96RU2 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP28Q96RU2 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP28Q96RU2 GSN-203ENST00000373808 2664 ntTSL 2 BASIC18.08■□□□□ 0.49
USP28Q96RU2 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC18.08■□□□□ 0.49
USP28Q96RU2 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
USP28Q96RU2 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.08■□□□□ 0.49
USP28Q96RU2 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
USP28Q96RU2 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
USP28Q96RU2 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
USP28Q96RU2 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.49
USP28Q96RU2 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
USP28Q96RU2 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC18.08■□□□□ 0.48
USP28Q96RU2 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP28Q96RU2 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP28Q96RU2 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC18.08■□□□□ 0.48
USP28Q96RU2 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
USP28Q96RU2 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP28Q96RU2 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
USP28Q96RU2 AL645939.2-201ENST00000427340 991 ntBASIC18.08■□□□□ 0.48
USP28Q96RU2 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.08■□□□□ 0.48
USP28Q96RU2 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.08■□□□□ 0.48
USP28Q96RU2 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.08■□□□□ 0.48
USP28Q96RU2 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.08■□□□□ 0.48
USP28Q96RU2 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.08■□□□□ 0.48
USP28Q96RU2 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms