Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 AC092171.5-201ENST00000608012 942 ntBASIC15.31■□□□□ 0.04
VPS13AQ96RL7 AC007718.1-201ENST00000621078 280 ntBASIC15.31■□□□□ 0.04
VPS13AQ96RL7 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
VPS13AQ96RL7 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 HNRNPA1P63-201ENST00000427917 963 ntBASIC15.3■□□□□ 0.04
VPS13AQ96RL7 NOC2LP1-201ENST00000450578 752 ntBASIC15.3■□□□□ 0.04
VPS13AQ96RL7 MARK2P5-201ENST00000507649 634 ntBASIC15.3■□□□□ 0.04
VPS13AQ96RL7 SCARNA21-201ENST00000517026 139 ntBASIC15.3■□□□□ 0.04
VPS13AQ96RL7 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 KRT8P4-201ENST00000509735 1454 ntBASIC15.3■□□□□ 0.04
VPS13AQ96RL7 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 AL008707.1-201ENST00000422498 534 ntBASIC15.3■□□□□ 0.04
VPS13AQ96RL7 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 AC105137.3-201ENST00000617588 984 ntBASIC15.3■□□□□ 0.04
VPS13AQ96RL7 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 AP001582.1-201ENST00000525856 295 ntBASIC15.3■□□□□ 0.04
VPS13AQ96RL7 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 MIR4754-201ENST00000582477 89 ntBASIC15.3■□□□□ 0.04
VPS13AQ96RL7 AC244157.2-201ENST00000616239 1006 ntBASIC15.3■□□□□ 0.04
VPS13AQ96RL7 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS13AQ96RL7 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 NDUFS6P1-201ENST00000485187 316 ntBASIC15.29■□□□□ 0.04
VPS13AQ96RL7 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 AL160314.3-201ENST00000556041 767 ntBASIC15.29■□□□□ 0.04
VPS13AQ96RL7 RNF146-211ENST00000609447 607 ntTSL 4 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 AL353770.1-201ENST00000614915 403 ntBASIC15.29■□□□□ 0.04
VPS13AQ96RL7 AC103691.2-201ENST00000618824 433 ntBASIC15.29■□□□□ 0.04
VPS13AQ96RL7 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 GHSR-202ENST00000427970 912 ntBASIC15.29■□□□□ 0.04
VPS13AQ96RL7 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 PIN4P1-201ENST00000451079 396 ntBASIC15.29■□□□□ 0.04
VPS13AQ96RL7 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms