Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC42Q96M95 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC42Q96M95 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CCDC42Q96M95 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC42Q96M95 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC42Q96M95 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC42Q96M95 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC42Q96M95 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CCDC42Q96M95 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CCDC42Q96M95 GSN-203ENST00000373808 2664 ntTSL 2 BASIC17.14■□□□□ 0.33
CCDC42Q96M95 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC42Q96M95 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CCDC42Q96M95 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 AC004987.2-201ENST00000395959 1148 ntBASIC17.13■□□□□ 0.33
CCDC42Q96M95 RAC2-202ENST00000401529 569 ntTSL 4 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 AC105233.2-201ENST00000523697 349 ntBASIC17.13■□□□□ 0.33
CCDC42Q96M95 AF228730.5-201ENST00000530288 346 ntBASIC17.13■□□□□ 0.33
CCDC42Q96M95 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CCDC42Q96M95 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CCDC42Q96M95 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC42Q96M95 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC42Q96M95 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC42Q96M95 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC42Q96M95 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC42Q96M95 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC42Q96M95 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 KRT18P2-201ENST00000447938 1258 ntBASIC17.12■□□□□ 0.33
CCDC42Q96M95 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 AL662844.1-201ENST00000546340 181 ntBASIC17.12■□□□□ 0.33
CCDC42Q96M95 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 AP002472.1-201ENST00000577490 586 ntBASIC17.12■□□□□ 0.33
CCDC42Q96M95 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC42Q96M95 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC42Q96M95 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC42Q96M95 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms