Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 WNT11-204ENST00000621122 789 ntTSL 5 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 NKILA-202ENST00000614771 2598 ntBASIC15.37■□□□□ 0.05
LMX1AQ8TE12 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LMX1AQ8TE12 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 AL355864.2-201ENST00000447420 863 ntBASIC15.36■□□□□ 0.05
LMX1AQ8TE12 BNIP3P42-201ENST00000454982 569 ntBASIC15.36■□□□□ 0.05
LMX1AQ8TE12 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 BNIP3P29-201ENST00000598302 571 ntBASIC15.36■□□□□ 0.05
LMX1AQ8TE12 AC011447.5-201ENST00000616168 564 ntBASIC15.36■□□□□ 0.05
LMX1AQ8TE12 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 AL662844.4-201ENST00000606367 2838 ntBASIC15.36■□□□□ 0.05
LMX1AQ8TE12 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
LMX1AQ8TE12 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 PCDHA14-201ENST00000506751 2298 ntBASIC15.35■□□□□ 0.05
LMX1AQ8TE12 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 AC009486.1-201ENST00000569860 813 ntBASIC15.35■□□□□ 0.05
LMX1AQ8TE12 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
LMX1AQ8TE12 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
LMX1AQ8TE12 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms