Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 MIR1909-201ENST00000411312 80 ntBASIC17.21■□□□□ 0.35
VPS52Q8N1B4 AC098850.1-201ENST00000419919 790 ntBASIC17.21■□□□□ 0.35
VPS52Q8N1B4 TTTY23B-201ENST00000442790 549 ntBASIC17.21■□□□□ 0.35
VPS52Q8N1B4 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 MIR6805-201ENST00000615055 62 ntBASIC17.21■□□□□ 0.35
VPS52Q8N1B4 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 ALOX12P2-203ENST00000570921 1945 ntBASIC17.21■□□□□ 0.35
VPS52Q8N1B4 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 AC007326.2-201ENST00000624224 7579 ntBASIC17.21■□□□□ 0.35
VPS52Q8N1B4 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
VPS52Q8N1B4 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
VPS52Q8N1B4 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
VPS52Q8N1B4 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.21■□□□□ 0.34
VPS52Q8N1B4 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
VPS52Q8N1B4 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
VPS52Q8N1B4 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 U82695.1-201ENST00000635752 1889 ntBASIC17.2■□□□□ 0.34
VPS52Q8N1B4 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 TIMM17BP1-201ENST00000545713 516 ntBASIC17.2■□□□□ 0.34
VPS52Q8N1B4 AC092337.1-201ENST00000568699 1129 ntBASIC17.2■□□□□ 0.34
VPS52Q8N1B4 AL365330.1-201ENST00000607459 531 ntBASIC17.2■□□□□ 0.34
VPS52Q8N1B4 AC074044.1-201ENST00000609673 707 ntBASIC17.2■□□□□ 0.34
VPS52Q8N1B4 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 AL136982.4-201ENST00000437689 1740 ntBASIC17.2■□□□□ 0.34
VPS52Q8N1B4 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 AC103702.1-201ENST00000548801 2630 ntBASIC17.2■□□□□ 0.34
VPS52Q8N1B4 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS52Q8N1B4 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS52Q8N1B4 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VPS52Q8N1B4 NORAD-201ENST00000565493 5339 ntBASIC17.19■□□□□ 0.34
VPS52Q8N1B4 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
VPS52Q8N1B4 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
VPS52Q8N1B4 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS52Q8N1B4 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms