Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 TEX30-203ENST00000376022 828 ntTSL 2 BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 KRT90P-201ENST00000549264 1064 ntBASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 PCDHB19P-201ENST00000570871 2371 ntBASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SHROOM1Q2M3G4 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 AC112504.1-201ENST00000623415 1841 ntBASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 MPV17-206ENST00000402722 827 ntTSL 3 BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 AC009486.1-201ENST00000569860 813 ntBASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 AC022188.1-201ENST00000620960 1664 ntBASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.3■□□□□ 0.52
SHROOM1Q2M3G4 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 AC090340.1-201ENST00000620778 4980 ntBASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 AC022137.2-201ENST00000503482 481 ntBASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.29■□□□□ 0.52
SHROOM1Q2M3G4 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 MFF-204ENST00000353339 2186 ntTSL 5 BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SHROOM1Q2M3G4 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms