Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.28■□□□□ 0.04
PCDH1Q08174 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.28■□□□□ 0.04
PCDH1Q08174 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
PCDH1Q08174 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PCDH1Q08174 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.28■□□□□ 0.04
PCDH1Q08174 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
PCDH1Q08174 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.28■□□□□ 0.04
PCDH1Q08174 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.28■□□□□ 0.04
PCDH1Q08174 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.28■□□□□ 0.04
PCDH1Q08174 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.28■□□□□ 0.04
PCDH1Q08174 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.28■□□□□ 0.04
PCDH1Q08174 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.28■□□□□ 0.04
PCDH1Q08174 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.28■□□□□ 0.04
PCDH1Q08174 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.28■□□□□ 0.04
PCDH1Q08174 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.28■□□□□ 0.04
PCDH1Q08174 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.28■□□□□ 0.04
PCDH1Q08174 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.28■□□□□ 0.04
PCDH1Q08174 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
PCDH1Q08174 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.28■□□□□ 0.04
PCDH1Q08174 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
PCDH1Q08174 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.28■□□□□ 0.04
PCDH1Q08174 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 AL136379.1-201ENST00000623471 2642 ntBASIC15.28■□□□□ 0.04
PCDH1Q08174 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
PCDH1Q08174 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PCDH1Q08174 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.27■□□□□ 0.04
PCDH1Q08174 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.27■□□□□ 0.04
PCDH1Q08174 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH1Q08174 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH1Q08174 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH1Q08174 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
PCDH1Q08174 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.27■□□□□ 0.04
PCDH1Q08174 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH1Q08174 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.27■□□□□ 0.04
PCDH1Q08174 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH1Q08174 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
PCDH1Q08174 AC127383.1-201ENST00000444697 1800 ntBASIC15.27■□□□□ 0.04
PCDH1Q08174 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH1Q08174 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.27■□□□□ 0.04
PCDH1Q08174 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH1Q08174 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH1Q08174 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH1Q08174 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
PCDH1Q08174 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH1Q08174 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH1Q08174 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.27■□□□□ 0.04
PCDH1Q08174 DNAJB3-202ENST00000449667 1266 ntBASIC15.27■□□□□ 0.04
PCDH1Q08174 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH1Q08174 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC15.27■□□□□ 0.04
PCDH1Q08174 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
PCDH1Q08174 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PCDH1Q08174 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.27■□□□□ 0.04
PCDH1Q08174 AL691403.2-201ENST00000618460 490 ntBASIC15.27■□□□□ 0.04
PCDH1Q08174 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
PCDH1Q08174 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.27■□□□□ 0.03
PCDH1Q08174 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH1Q08174 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH1Q08174 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH1Q08174 PPT1-215ENST00000641471 2368 ntBASIC15.27■□□□□ 0.03
PCDH1Q08174 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH1Q08174 AL607033.1-201ENST00000623900 1599 ntBASIC15.27■□□□□ 0.03
PCDH1Q08174 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH1Q08174 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH1Q08174 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH1Q08174 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PCDH1Q08174 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.27■□□□□ 0.03
PCDH1Q08174 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.03
PCDH1Q08174 AC087481.3-201ENST00000602886 1894 ntBASIC15.27■□□□□ 0.03
PCDH1Q08174 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.27■□□□□ 0.03
PCDH1Q08174 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.27■□□□□ 0.03
PCDH1Q08174 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.26■□□□□ 0.03
PCDH1Q08174 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PCDH1Q08174 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms